Gene omics information

Query gene ID Ptp.5840.2.S1_a_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5683.9Ptp.5840.2.S1_a_atBI128120hypothetical protein-6e-9At5g47320RPS19 (RIBOSOMAL PROTEIN S19)S.X.H.G.
0.4875.4PtpAffx.14672.1.A1_x_atCV240002--6e-1At1g34095unknown proteinS.X.H.G.
0.4268.6PtpAffx.87060.1.A1_atBP932918hypothetical protein-6e-12At5g67220nitrogen regulation family proteinS.X.H.G.
0.4067.0PtpAffx.28832.1.S1_atCV254458hypothetical protein-4e-12At1g55840SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer proteinS.X.H.G.
0.3964.6PtpAffx.138893.1.A1_atBP930372hypothetical protein-1e+0At5g03030DNAJ heat shock N-terminal domain-containing proteinS.X.H.G.
0.3661.6PtpAffx.208692.1.S1_atpmrna17245hypothetical protein-5e-19At1g70480unknown proteinS.X.H.G.
0.3559.7Ptp.4414.2.S1_s_atBU830367hypothetical protein-8e-36At1g61150-S.X.H.G.
0.3052.0PtpAffx.25041.1.S1_atCV236081hypothetical protein-2e+0At4g29270acid phosphatase class B family proteinS.X.H.G.
0.2950.5PtpAffx.78576.2.A1_a_atCV246053hypothetical protein-2e-20At4g28830methyltransferase/ nucleic acid bindingS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.295.6GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.295.6GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue series
3.393.7GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue series
3.293.5GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue series
3.293.5GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue series
3.092.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.092.9GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.092.9GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.092.9GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.892.1GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.391e-84313PtpAffx.4771.1.A1_atCV275330--5e+0At5g0950040S ribosomal protein S15 (RPS15C)C.G.S.X.
0.055e-756PtpAffx.148480.1.S1_atCN518887--2e+0At1g27610unknown proteinC.G.S.X.
0.055e-756PtpAffx.148480.1.S1_s_atCN518887hypothetical protein-2e+0At1g27610unknown proteinC.G.S.X.
0.042e-344Ptp.5785.1.S1_s_atCV246306hypothetical protein-1e-20At2g34430LHB1B1C.G.S.X.
0.031e-138PtpAffx.215669.1.S1_atpmrna30006hypothetical protein-7e-2At2g22260oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.121e-138PtpAffx.20656.1.A1_atCV237674hypothetical protein-4e-1At5g5025031 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putativeC.G.S.X.
0.021e-138Ptp.2180.1.S1_atCV239634--4e-2At2g20280zinc finger (CCCH-type) family proteinC.G.S.X.
0.035e-136Ptp.3152.1.A1_atDN485400tir-nbs-lrr resistance protein /// tir-nbs-lrr resistance protein-5e+0At3g01326-C.G.S.X.
0.012e+034PtpAffx.210506.1.S1_atpmrna20610hypothetical protein-1e-43At1g74470geranylgeranyl reductaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.086e-961Arabidopsis thalianaAt5g47320834779RPS19 (RIBOSOMAL PROTEIN S19)Nuclear encoded mitochondrial ribosome subunit.---C.G.S.X.
0.091e-448Glycine maxGmaAffx.34612.1.S1_atAW311496--8e-2Atmg00690-C.G.S.X.
0.064e-548Hordeum vulgareContig11291_atContig11291--1e-4At5g47320RPS19 (RIBOSOMAL PROTEIN S19)C.G.S.X.
0.169e-28125Oryza sativaOsAffx.32294.1.A1_at---0C.G.S.X.
0.042e-240Triticum aestivumTaAffx.34535.1.S1_atBJ297101--2e-3At5g47320RPS19 (RIBOSOMAL PROTEIN S19)C.G.S.X.
0.124e-38157Vitis vinifera1609516_atCB976436similar to ribosomal protein L2-8e-9At5g47320RPS19 (RIBOSOMAL PROTEIN S19)C.G.S.X.
0.075e-2097Zea maysZm.9785.1.S1_atCK371122hypothetical protein LOC100276267-1e-10At5g47320RPS19 (RIBOSOMAL PROTEIN S19)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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