Gene omics information

Query gene ID	Ptp.5819.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	Ptp.5819.1.S1_at	CK114175	hypothetical protein	-	3e-18	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.59404.1.S1_at	BI138852	hypothetical protein	-	2e-40	At3g23300	dehydration-responsive protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.63988.2.S1_s_at	BU833503	hypothetical protein	-	3e-17	At5g57580	calmodulin-binding protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.3857.1.S1_s_at	BU884442	hypothetical protein	-	6e-31	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.131455.1.S1_s_at	CK102810	hypothetical protein	-	7e-39	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.146086.1.S1_s_at	CX180124	hypothetical protein	-	3e-20	At5g38830	tRNA synthetase class I (C) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	95.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	5e-156	551	Ptp.2461.1.S1_at	CV245941	hypothetical protein	-	3e-49	At5g02100	UNE18 (UNFERTILIZED EMBRYO SAC 18)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.214700.1.S1_at	pmrna28520	hypothetical protein	-	9e-2	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.210724.1.S1_at	pmrna21034	hypothetical protein	-	2e-4	At2g24350	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.202658.1.S1_at	pmrna5309	hypothetical protein	-	4e-47	At2g32700	WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.76058.1.A1_at	CV245616	-	-	1e+0	At5g20190	binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.5596.2.A1_a_at	CV242620	hypothetical protein	-	9e-2	At1g74440	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.29457.1.S1_s_at	CV231417	hypothetical protein	-	9e-37	At2g25520	phosphate translocator-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.2548.1.A1_at	CV259452	-	-	4e-12	At1g76690	OPR2	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.2225.1.S1_at	BP935950	-	-	2e-9	At3g05200	ATL6	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	3e-18	93	Arabidopsis thaliana	At5g59420	836061	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	3e-40	167	Glycine max	GmaAffx.78365.1.S1_at	BG509076	-	-	1e-95	At5g02100	UNE18 (UNFERTILIZED EMBRYO SAC 18)	C.G.	S.X.	Please select
0.10	8e-26	117	Hordeum vulgare	Contig4464_at	Contig4464	-	-	1e-27	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	C.G.	S.X.	Please select
0.08	2e-23	111	Oryza sativa	Os03g0274000	AK060769.1	-	Oxysterol-binding protein family protein	1e-24	At5g02100	UNE18 (UNFERTILIZED EMBRYO SAC 18)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	3e-21	103	Triticum aestivum	Ta.8152.1.S1_at	CD871046	-	-	4e-22	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	C.G.	S.X.	Please select
0.02	4e-2	38	Vitis vinifera	1619505_a_at	CB981292	hypothetical protein LOC100250945	-	6e-25	At2g01350	QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE)	C.G.	S.X.	Please select
0.13	4e-21	101	Zea mays	Zm.6282.1.S1_at	AY103776.1	oxysterol-binding protein	-	1e-30	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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