Gene omics information

Query gene ID	Ptp.5762.1.S1_at
Gene name	ebs-bah-phd domain-containing protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	Ptp.5762.1.S1_at	AJ777748	ebs-bah-phd domain-containing protein	-	2e-46	At4g22140	DNA binding / protein binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.3203.6.S1_a_at	CV131510	hypothetical protein	-	3e-11	At4g24940	SAE1A (SUMO-ACTIVATING ENZYME 1A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.5617.2.S1_a_at	CV281313	-	-	3e-19	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.1361.3.S1_s_at	BU875386	hypothetical protein	-	2e-1	At4g14660	NRPE7	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.134857.2.S1_at	CN523812	hypothetical protein	-	2e-24	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.3977.1.S1_s_at	CA821307	hypothetical protein	-	2e-18	At5g52040	ATRSP41	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.123989.1.S1_at	DN495946	-	-	8e-15	At5g67630	DNA helicase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.39134.2.S1_s_at	BU818720	hypothetical protein	-	8e-23	At5g10270	CDKC	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.61544.1.A1_at	CA931045	hypothetical protein	-	4e-19	At3g59380	FTA (FARNESYLTRANSFERASE A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.156707.1.S1_s_at	BU873655	hypothetical protein	-	4e-4	At2g03110	RNA binding / nucleic acid binding	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	95.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	0	975	Ptp.698.1.A1_at	CV242689	ebs-bah-phd domain-containing protein /// ebs-bah-phd domain-containing protein	-	5e-51	At4g22140	DNA binding / protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.41	5e-143	508	PtpAffx.133295.1.A1_at	CV283603	ebs-bah-phd domain-containing protein /// ebs-bah-phd domain-containing protein	-	5e-25	At4g22140	DNA binding / protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	1e-54	214	PtpAffx.159891.1.A1_at	CV256085	ebs-bah-phd domain-containing protein	-	9e-5	At4g22140	DNA binding / protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.31	8e-40	165	PtpAffx.85691.1.S1_s_at	CV243017	ebs-bah-phd domain-containing protein	-	6e-25	At4g22140	DNA binding / protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.43	2e-34	147	PtpAffx.215479.1.S1_x_at	pmrna29697	ebs-bah-phd domain-containing protein /// ebs-bah-phd domain-containing protein	-	1e-27	At4g22140	DNA binding / protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.43	2e-34	147	PtpAffx.215479.1.S1_at	pmrna29697	ebs-bah-phd domain-containing protein /// ebs-bah-phd domain-containing protein	-	1e-27	At4g22140	DNA binding / protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	2e-6	54	Ptp.4563.1.S1_at	DN490347	hypothetical protein	-	2e-19	At4g39100	SHL1 (short life)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	5e-4	46	PtpAffx.216769.1.S1_at	pmrna31756	hypothetical protein	-	1e+0	At4g04260	bromo-adjacent homology (BAH) domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	38	PtpAffx.2903.1.S1_s_at	CV268732	hypothetical protein	-	2e-64	At5g27640	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-46	186	Arabidopsis thaliana	At4g22140	828303	DNA binding / protein binding / zinc ion binding	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	5e-69	262	Glycine max	Gma.8588.1.S1_at	AI443020	-	-	3e-23	At4g22140	DNA binding / protein binding / zinc ion binding	C.G.	S.X.	Please select
0.15	1e-8	59	Hordeum vulgare	Contig9869_at	Contig9869	-	-	7e-13	At4g39100	SHL1 (short life)	C.G.	S.X.	Please select
0.10	5e-14	79	Oryza sativa	Os08g0421900	AK064578.1	-	Zn-finger-like, PHD finger domain containingprotein	3e-5	At4g39100	SHL1 (short life)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-3	44	Triticum aestivum	Ta.3974.1.S1_s_at	BQ802111	-	-	8e-13	At4g39100	SHL1 (short life)	C.G.	S.X.	Please select
0.21	3e-17	87	Vitis vinifera	1609943_at	CB349825	-	-	5e-6	At4g39100	SHL1 (short life)	C.G.	S.X.	Please select
0.15	7e-13	73	Zea mays	Zm.2557.2.S1_x_at	AY106871.1	DNA binding protein	-	9e-6	At4g39100	SHL1 (short life)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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