CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5748.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.5748.1.S1_s_at CX657082 hypothetical protein - 3e-13 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.73 93.6 PtpAffx.249.2.S1_at D83226.1 hypothetical protein - 5e-16 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.67 91.1 PtpAffx.202166.1.S1_at pmrna4333 hypothetical protein - 2e-12 At2g45430 DNA-binding protein-related S.X. H.G.
0.67 91.1 PtpAffx.618.2.S1_a_at CV246676 - - 5e-3 At5g02380 MT2B (METALLOTHIONEIN 2B) S.X. H.G.
0.50 78.6 PtpAffx.11593.1.S1_at CV259787 hypothetical protein - 1e-27 At4g12080 DNA-binding family protein S.X. H.G.
0.33 57.5 PtpAffx.618.2.S1_x_at CV246676 - - 5e-3 At5g02380 MT2B (METALLOTHIONEIN 2B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.1 97.6 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.3 96.9 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.71 1e-139 496 PtpAffx.249.2.S1_at D83226.1 hypothetical protein - 5e-16 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.42 1e-99 363 PtpAffx.249.118.S1_s_at CV275916 hypothetical protein - 2e-2 At4g12510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.41 7e-83 307 Ptp.2477.1.S1_s_at CV226314 hypothetical protein - 2e-4 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.12 5e-13 75 PtpAffx.249.356.S1_at CV271423 - - 4e-1 At2g27160 unknown protein C.G. S.X.
0.14 7e-9 61 PtpAffx.17000.1.S1_at CV273185 - - 6e-3 At1g12100 lipid binding C.G. S.X.
0.07 3e-5 50 PtpAffx.14248.1.S1_at CV276072 - - 9e-2 At4g12530 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.02 4e-1 36 PtpAffx.224567.1.S1_s_at pmrna43218 hypothetical protein - 5e-42 At1g50310 STP9 (SUGAR TRANSPORTER 9) C.G. S.X.
0.02 4e-1 36 PtpAffx.224567.1.S1_at pmrna43218 hypothetical protein - 5e-42 At1g50310 STP9 (SUGAR TRANSPORTER 9) C.G. S.X.
0.01 2e+0 34 PtpAffx.225304.1.S1_at pmrna44558 hypothetical protein - 2e-49 At1g72440 EDA25 (embryo sac development arrest 25) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 3e-13 75 Arabidopsis thaliana At1g62510 842548 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;OBPMVFA - - - C.G. S.X.
0.11 4e-4 46 Glycine max GmaAffx.80464.1.S1_at CA850542 - - 4e-5 At4g12490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HVSMEl0009I21r2_at HVSMEl0009I21r2 - - 1e+1 At4g18230 - C.G. S.X.
0.03 6e-1 36 Oryza sativa Os10g0404900 9638.m02261 - Homeobox-leucine zipper protein HAT5 (HD-ZIPprotein 5) (HD-ZIP protein ATHB-1) 8e-3 At5g15150 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) C.G. S.X.
0.06 1e+0 34 Triticum aestivum Ta.13950.3.S1_x_at CA638600 - - 4e+0 At1g12090 ELP (EXTENSIN-LIKE PROTEIN) C.G. S.X.
0.21 1e-6 52 Vitis vinifera 1607766_at CF605363 hypothetical protein LOC100252384 - 2e-5 At1g12100 lipid binding C.G. S.X.
0.03 2e+0 32 Zea mays Zm.2541.1.A1_at CF629797 cortical cell-delineating protein - 2e+0 At1g12090 ELP (EXTENSIN-LIKE PROTEIN) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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