CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5740.1.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.76 94.3 Ptp.5740.1.S1_a_at CV241383 hypothetical protein - 4e-7 At5g49710 unknown protein S.X. H.G.
0.38 63.7 PtpAffx.1099.1.A1_s_at CV279908 hypothetical protein - 2e-47 At2g19830 SNF7.2 S.X. H.G.
0.36 61.6 Ptp.1196.1.A1_at CV228560 chromatin remodeling complex subunit - 2e-12 At2g46020 transcription regulatory protein SNF2, putative S.X. H.G.
0.32 55.2 PtpAffx.30748.1.A1_a_at CV256204 hypothetical protein - 2e-31 At5g55000 FIP2 S.X. H.G.
0.30 52.0 Ptp.3489.1.S1_s_at CK092358 hypothetical protein - 3e-46 At5g57330 aldose 1-epimerase family protein S.X. H.G.
0.29 50.5 PtpAffx.3784.2.A1_at CV228383 hypothetical protein - 1e-4 At2g28360 - S.X. H.G.
0.27 47.1 PtpAffx.52080.1.S1_s_at CV247275 hypothetical protein - 5e-22 At1g27310 NTF2A (NUCLEAR TRANSPORT FACTOR 2A) S.X. H.G.
0.27 47.1 PtpAffx.11198.1.A1_at CV275391 hypothetical protein - 1e+0 At2g28355 LCR5 (Low-molecular-weight cysteine-rich 5) S.X. H.G.
0.27 47.1 PtpAffx.15785.1.S1_at CV234340 hypothetical protein - 1e-7 At2g19350 unknown protein S.X. H.G.
0.27 47.1 Ptp.2585.1.S1_at CK318462 hypothetical protein - 4e-15 At5g05100 nucleic acid binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.3 95.8 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1 93.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 8e-142 504 PtpAffx.119504.1.A1_at BP934941 hypothetical protein - 1e-3 At4g24590 unknown protein C.G. S.X.
0.41 4e-85 315 PtpAffx.132398.1.A1_at CV243546 hypothetical protein - 1e+1 At5g49710 unknown protein C.G. S.X.
0.20 3e-67 256 PtpAffx.147206.1.A1_at CV245523 - - 4e+0 At5g24879 unknown protein C.G. S.X.
0.08 4e-11 69 PtpAffx.95256.1.A1_at CV254814 hypothetical protein - 2e-1 At4g25510 unknown protein C.G. S.X.
0.04 4e-8 59 PtpAffx.88048.2.S1_a_at CV256013 - - 1e-1 At3g52620 unknown protein C.G. S.X.
0.04 1e-7 57 Ptp.6525.2.A1_at CV276634 hypothetical protein - 4e-1 At1g33910 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein C.G. S.X.
0.04 6e-7 56 PtpAffx.1398.14.S1_at CV239988 hypothetical protein - 1e-16 At3g54840 ARA6 C.G. S.X.
0.05 6e-7 56 PtpAffx.133899.1.A1_at CV257452 hypothetical protein - 1e+0 At5g65410 HB25 (HOMEOBOX PROTEIN 25) C.G. S.X.
0.04 2e-6 54 PtpAffx.5499.1.A1_at CV245700 - - 4e-1 At4g22140 DNA binding / protein binding / zinc ion binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 4e-7 56 Arabidopsis thaliana At5g49710 835034 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPMOF - - - C.G. S.X.
0.29 1e-51 204 Glycine max Gma.2426.1.S1_at BI971522 - - 3e-9 At4g24590 unknown protein C.G. S.X.
0.05 2e-7 56 Hordeum vulgare HVSMEh0094M14f_s_at HVSMEh0094M14f - - 2e-1 At4g21215 unknown protein C.G. S.X.
0.05 2e-1 38 Oryza sativa Os02g0781700 AK061791.1 - Conserved hypothetical protein 5e-5 At4g24590 unknown protein C.G. S.X.
0.05 2e-6 54 Triticum aestivum TaAffx.59573.1.S1_at CA598743 - - 2e-1 At4g11010 NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) C.G. S.X.
0.25 3e-45 180 Vitis vinifera 1620640_s_at CA809468 hypothetical protein LOC100267834 - 9e-9 At4g24590 unknown protein C.G. S.X.
0.10 7e-7 54 Zea mays Zm.7881.1.A1_a_at BM080283 - - 3e-3 At4g24590 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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