CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5712.1.S1_at

Gene name ammonium transporter

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.88 97.7 Ptp.5712.1.S1_at CK113355 ammonium transporter - 3e-28 At1g64780 ATAMT1 S.X. H.G.
0.38 63.7 Ptp.7641.1.S1_at DN497831 hypothetical protein - 2e-1 At1g28630 unknown protein S.X. H.G.
0.38 63.7 Ptp.1044.1.S1_at CF235854 hypothetical protein - 3e-33 At4g05390 ATRFNR1 (ROOT FNR 1) S.X. H.G.
0.36 61.6 Ptp.2149.1.S1_at CK089576 hypothetical protein - 2e-3 At2g43150 proline-rich extensin-like family protein S.X. H.G.
0.35 59.7 Ptp.163.1.S1_at CK089074 caffeic acid 3-O-methyltransferase - 2e-15 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) S.X. H.G.
0.32 55.2 PtpAffx.47744.2.S1_at CK093950 hypothetical protein - 3e-1 At4g32900 aminoacyl-tRNA hydrolase S.X. H.G.
0.31 53.7 Ptp.3169.2.S1_a_at CK104417 hypothetical protein - 9e-2 At1g14870 - S.X. H.G.
0.31 53.7 Ptp.7093.1.A1_at DN488225 hypothetical protein - 2e+0 At2g05530 glycine-rich protein S.X. H.G.
0.30 52.0 Ptp.5989.1.S1_at BU814762 hypothetical protein - 2e-21 At1g67600 - S.X. H.G.
0.30 52.0 Ptp.3482.1.S1_at BU883985 hypothetical protein - 2e+0 At5g20885 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.6 99.9 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
13.3 99.4 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.6 98.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.5 98.6 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.6 97.2 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 3e-87 323 PtpAffx.215156.1.S1_at pmrna29194 ammonium transporter - 6e-2 At1g64780 ATAMT1 C.G. S.X.
0.36 1e-37 159 PtpAffx.202713.1.S1_at pmrna5432 ammonium transporter - 6e-17 At3g24290 AMT1 C.G. S.X.
0.28 3e-29 131 PtpAffx.208227.1.S1_at pmrna16371 ammonium transporter - 2e-20 At1g64780 ATAMT1 C.G. S.X.
0.25 6e-18 93 PtpAffx.3665.1.S1_a_at BP934564 ammonium transporter - 2e-11 At4g28700 AMT1 C.G. S.X.
0.06 2e-17 91 PtpAffx.200743.1.S1_at pmrna1428 - - 2e-4 At3g24290 AMT1 C.G. S.X.
0.12 9e-17 89 PtpAffx.156186.1.S1_at BP922063 ammonium transporter - 9e-11 At1g64780 ATAMT1 C.G. S.X.
0.29 4e-16 87 PtpAffx.202712.1.S1_at pmrna5431 ammonium transporter - 4e-21 At4g28700 AMT1 C.G. S.X.
0.02 5e-3 44 Ptp.2085.2.S1_s_at CF231740 hypothetical protein - 2e-30 At1g22300 GRF10 (GENERAL REGULATORY FACTOR 10) C.G. S.X.
0.01 3e-1 38 PtpAffx.223638.1.S1_x_at pmrna41724 hypothetical protein - 1e-1 At3g18800 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 3e-28 127 Arabidopsis thaliana At1g64780 842786 ATAMT1 encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root. - - - C.G. S.X.
0.03 3e-1 38 Glycine max Gma.9265.1.S1_at BU551320 - - 6e-6 At4g28700 AMT1 C.G. S.X.
0.02 7e-6 52 Hordeum vulgare Contig20708_at Contig20708 - - 1e-4 At4g13510 AMT1 C.G. S.X.
0.13 5e-10 67 Oryza sativa Os02g0620600 AK107204.1 - Rh-like protein/ammonium transporter familyprotein 2e-17 At4g13510 AMT1 C.G. S.X.
0.13 1e-9 65 Triticum aestivum Ta.12823.1.S1_at CA638403 Ammonium transporter Amt1;1 - 2e-20 At4g13510 AMT1 C.G. S.X.
0.07 3e-1 36 Vitis vinifera 1610744_at CF415597 hypothetical protein LOC100258016 - 1e+0 At2g47170 ARF1A1C C.G. S.X.
0.02 2e+0 34 Zea mays Zm.11141.1.A1_at BM338572 - - 1e-7 At1g64780 ATAMT1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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