CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5696.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 Ptp.5696.1.S1_s_at CV240717 hypothetical protein - 5e-41 At2g19830 SNF7.2 S.X. H.G.
0.60 86.0 PtpAffx.18096.1.A1_at CV261250 - - 1e-6 At1g78800 glycosyl transferase family 1 protein S.X. H.G.
0.59 84.9 PtpAffx.3590.1.S1_at CV279299 hypothetical protein - 1e-31 At5g42300 UBL5 (UBIQUITIN-LIKE PROTEIN 5) S.X. H.G.
0.33 57.5 PtpAffx.30368.1.S1_at CV254627 hypothetical protein - 1e-1 At1g76180 ERD14 (EARLY RESPONSE TO DEHYDRATION 14) S.X. H.G.
0.23 40.5 PtpAffx.12741.1.A1_at CV234093 - - 8e-2 At4g08230 glycine-rich protein S.X. H.G.
0.15 25.3 PtpAffx.61027.5.S1_s_at CV275671 hypothetical protein - 2e+0 At3g03847 auxin-responsive family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.9 92.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7 91.8 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 0 864 PtpAffx.1099.1.A1_s_at CV279908 hypothetical protein - 2e-47 At2g19830 SNF7.2 C.G. S.X.
0.73 0 827 PtpAffx.206404.1.S1_at pmrna12723 hypothetical protein - 1e-45 At2g19830 SNF7.2 C.G. S.X.
0.33 2e-68 260 PtpAffx.1099.4.A1_at CV272037 - - 2e-8 At1g15250 60S ribosomal protein L37 (RPL37A) C.G. S.X.
0.03 6e-1 36 PtpAffx.202360.1.S1_at pmrna4738 hypothetical protein - 4e-3 At5g06650 GIS2 (GLABROUS INFLORESCENCE STEMS 2) C.G. S.X.
0.02 2e+0 34 PtpAffx.3738.1.A1_s_at CV267818 hypothetical protein - 7e-15 At5g42090 - C.G. S.X.
0.02 2e+0 34 PtpAffx.224007.1.S1_at pmrna42237 hypothetical protein - 9e-2 At1g29418 unknown protein C.G. S.X.
0.03 2e+0 34 PtpAffx.218672.1.S1_at pmrna34376 hypothetical protein - 3e-1 At1g66380 MYB114 (myb domain protein 114) C.G. S.X.
0.02 2e+0 34 PtpAffx.216480.1.S1_at pmrna31265 hypothetical protein - 2e-3 At5g22000 RHF2A (RING-H2 GROUP F2A) C.G. S.X.
0.01 2e+0 34 PtpAffx.211484.1.S1_at pmrna22506 hypothetical protein - 7e-149 At2g45540 WD-40 repeat family protein / beige-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 5e-41 169 Arabidopsis thaliana At2g19830 816502 SNF7.2 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex, plasma membrane;MPFOBA - - - C.G. S.X.
0.41 3e-92 339 Glycine max GmaAffx.92058.1.S1_at CF807783 - - 2e-57 At2g19830 SNF7.2 C.G. S.X.
0.19 1e-18 93 Hordeum vulgare Contig7548_at Contig7548 - - 5e-35 At2g19830 SNF7.2 C.G. S.X.
0.22 1e-39 165 Oryza sativa Os09g0267600 AK065728.1 - Copia-like retroelement pol polyprotein 1e-36 At2g19830 SNF7.2 C.G. S.X.
0.25 6e-28 125 Triticum aestivum Ta.6166.2.S1_a_at CK213858 - - 3e-41 At2g19830 SNF7.2 C.G. S.X.
0.40 9e-117 418 Vitis vinifera 1609445_at CF215229 hypothetical protein LOC100242218 - 6e-69 At4g29160 SNF7.1 C.G. S.X.
0.23 1e-42 173 Zea mays Zm.5688.2.A1_at BM338540 charged multivesicular body protein 4b - 1e-45 At2g19830 SNF7.2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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