CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5663.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.5663.1.S1_s_at CN549279 hypothetical protein - 2e-3 At4g26400 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.50 78.6 PtpAffx.2427.1.S1_at CV274393 hypothetical protein - 2e-19 At4g22680 MYB85 (myb domain protein 85) S.X. H.G.
0.50 78.6 PtpAffx.26013.1.S1_at CV228387 hypothetical protein - 1e-11 At2g46890 oxidoreductase, acting on the CH-CH group of donors S.X. H.G.
0.43 69.7 PtpAffx.1193.1.S1_at CV227263 coniferylaldehyde 5- hydroxylase - 6e-5 At4g36220 FAH1 (FERULIC ACID 5-HYDROXYLASE 1) S.X. H.G.
0.33 57.5 PtpAffx.8047.1.A1_at CV265327 hypothetical protein - 3e-2 At2g36610 ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22) S.X. H.G.
0.29 50.5 Ptp.6384.1.S1_a_at CV265840 hypothetical protein - 1e-19 At1g46480 WOX4 (WUSCHEL RELATED HOMEOBOX 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.7 99.7 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
17.5 99.6 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
13.6 99.4 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.4 98.6 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.0 98.0 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 1471 Ptp.5663.1.S1_at CN549279 hypothetical protein - 2e-3 At4g26400 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.40 1e-153 543 PtpAffx.14081.1.S1_at CV231498 hypothetical protein - 7e-9 At3g46620 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 4e-2 40 PtpAffx.54013.1.S1_at CF233803 hypothetical protein - 3e-8 At1g55530 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 4e-2 40 Ptp.4630.1.S1_at AI164519 hypothetical protein - 3e-17 At1g55530 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 2e-1 38 PtpAffx.38474.1.A1_at CV242899 hypothetical protein - 2e-3 At3g50110 ATPEN3 (ARABIDOPSIS THALIANA PTEN 3) C.G. S.X.
0.02 3e+0 34 PtpAffx.50534.1.A1_s_at CV241892 hypothetical protein - 2e-52 At2g38770 EMB2765 (EMBRYO DEFECTIVE 2765) C.G. S.X.
0.01 3e+0 34 PtpAffx.3573.1.S1_at DN485209 - - 1e-5 At3g50890 AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28) C.G. S.X.
0.01 3e+0 34 PtpAffx.219693.1.S1_at pmrna35674 hypothetical protein - 3e-32 At1g77550 protein binding / tubulin-tyrosine ligase C.G. S.X.
0.02 3e+0 34 PtpAffx.214384.1.S1_at pmrna27990 hypothetical protein - 3e-2 At5g57450 XRCC3 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-3 44 Arabidopsis thaliana At4g26400 828746 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:endomembrane system;PMOFVB - - - C.G. S.X.
0.02 1e+1 32 Glycine max GmaAffx.56647.1.S1_at CA936003 - - 2e-1 At4g40100 ABA-responsive protein-related C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig18152_at Contig18152 - - 4e+0 At3g53200 AtMYB27 (myb domain protein 27) C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.28314.1.A1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.64082.1.S1_at BJ316151 - - 4e+0 At4g32130 carbohydrate binding C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1622062_at CB340908 - - 3e+0 At1g64355 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.475.1.A1_at AI677510 - - 2e-1 At1g74210 glycerophosphoryl diester phosphodiesterase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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