CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5621.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 Ptp.5621.1.S1_s_at CV231534 hypothetical protein - 2e-89 At3g48930 EMB1080 (embryo defective 1080) S.X. H.G.
0.73 93.6 Ptp.1464.2.S1_x_at CV281077 - - 3e-40 At2g47610 60S ribosomal protein L7A (RPL7aA) S.X. H.G.
0.60 86.0 Ptp.1431.1.S1_at CX654507 hypothetical protein - 3e-73 At4g16720 60S ribosomal protein L15 (RPL15A) S.X. H.G.
0.57 84.2 Ptp.1464.2.S1_at CV281077 - - 3e-40 At2g47610 60S ribosomal protein L7A (RPL7aA) S.X. H.G.
0.55 82.2 Ptp.6777.2.S1_s_at CX654265 hypothetical protein - 3e-15 At5g28060 40S ribosomal protein S24 (RPS24B) S.X. H.G.
0.35 59.7 Ptp.1986.1.S1_a_at CV245876 hypothetical protein - 1e-41 At3g28900 60S ribosomal protein L34 (RPL34C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 96.3 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5 90.9 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 1e-110 400 Ptp.2016.1.S1_a_at CV259926 hypothetical protein - 1e-38 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.34 9e-65 248 Ptp.4316.1.S1_a_at CV270819 hypothetical protein - 5e-47 At5g23740 RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) C.G. S.X.
0.11 2e-7 57 Ptp.4065.1.S1_at DN484895 - - 4e+0 At4g26230 60S ribosomal protein L31 (RPL31B) C.G. S.X.
0.04 6e-4 46 Ptp.6018.1.S1_at CK104410 - - 7e-2 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.03 6e-1 36 PtpAffx.63377.1.A1_at CV243021 - - 3e-1 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
0.02 2e+0 34 PtpAffx.59036.1.S1_at CV244763 hypothetical protein - 2e+0 At5g54760 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
0.01 2e+0 34 PtpAffx.53545.1.S1_at BU884830 hypothetical protein - 4e-27 At1g04850 ubiquitin-associated (UBA)/TS-N domain-containing protein C.G. S.X.
0.01 2e+0 34 PtpAffx.224765.1.S1_at pmrna43602 hypothetical protein - 2e-5 At4g27300 S-locus protein kinase, putative C.G. S.X.
0.01 2e+0 34 PtpAffx.223242.1.S1_at pmrna41133 hypothetical protein - 2e-64 At1g58060 helicase domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.55 2e-89 329 Arabidopsis thaliana At3g48930 824054 EMB1080 (embryo defective 1080) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane;MOBAFP - - - C.G. S.X.
0.51 3e-43 176 Glycine max GmaAffx.92522.1.S1_at CF808247 Ribosomal protein S11 mRNA, 3' end - 1e-24 At5g23740 RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) C.G. S.X.
0.40 2e-54 212 Hordeum vulgare Contig14638_at Contig14638 - - 4e-35 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
0.42 1e-58 228 Oryza sativa Os.12042.1.S1_at - - - 0 C.G. S.X.
0.36 7e-31 135 Triticum aestivum Ta.1289.3.S1_at BJ254846 - - 8e-34 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
0.44 3e-76 284 Vitis vinifera 1610354_s_at CF511640 hypothetical protein LOC100244095 - 1e-50 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.40 4e-58 224 Zea mays Zm.2157.7.S1_at CF019402 ribosomal protein S11 - 1e-38 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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