CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5593.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.35 59.7 Ptp.5593.1.S1_at DN495608 hypothetical protein - 7e-15 At4g26240 unknown protein S.X. H.G.
0.80 96.0 Ptp.7787.1.S1_s_at DN499212 - - 4e+0 At2g05642 - S.X. H.G.
0.60 86.0 PtpAffx.135882.1.A1_at CV281275 hypothetical protein - 1e-7 At1g78420 protein binding / zinc ion binding S.X. H.G.
0.46 73.7 Ptp.2558.1.S1_at CK096344 hypothetical protein - 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) S.X. H.G.
0.44 71.9 PtpAffx.12253.1.A1_at CV225881 hypothetical protein - 3e+0 At4g32960 unknown protein S.X. H.G.
0.43 69.7 PtpAffx.25116.1.A1_at CV228813 hypothetical protein - 2e-8 At3g54130 josephin family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 95.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8 86.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8 86.4 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 PtpAffx.69786.1.S1_at CV243501 hypothetical protein - 9e-24 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.01 5e-1 36 PtpAffx.213331.1.S1_at pmrna26076 hypothetical protein - 1e-112 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.02 5e-1 36 Ptp.3250.1.S1_s_at BU815407 hypothetical protein - 5e-35 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.01 2e+0 34 PtpAffx.225226.1.S1_s_at pmrna44417 hypothetical protein - 5e-6 At4g21370 S-locus protein kinase, putative C.G. S.X.
0.03 2e+0 34 PtpAffx.220709.1.S1_at pmrna37125 hypothetical protein - 6e-1 At3g03830 auxin-responsive protein, putative C.G. S.X.
0.02 2e+0 34 PtpAffx.213844.1.S1_at pmrna27010 hypothetical protein - 3e-6 At2g32770 purple acid phosphatase (PAP13) C.G. S.X.
0.01 2e+0 34 PtpAffx.210075.1.S1_at pmrna19848 hypothetical protein - 1e-2 At5g27060 AtRLP53 (Receptor Like Protein 53) C.G. S.X.
0.01 2e+0 34 PtpAffx.207033.1.S1_at pmrna13939 hypothetical protein - 4e-14 At3g18730 TSK (TONSOKU) C.G. S.X.
0.02 2e+0 34 PtpAffx.202190.1.S1_at pmrna4376 hypothetical protein - 4e-32 At3g61080 fructosamine kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 7e-15 81 Arabidopsis thaliana At4g26240 828730 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF - - - C.G. S.X.
0.04 2e+0 34 Glycine max Gma.11937.1.A1_at BF070961 - - 2e-4 At3g02110 scpl25 (serine carboxypeptidase-like 25) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig21616_s_at Contig21616 - - 8e-1 At4g18480 CHLI1 C.G. S.X.
0.03 4e-2 40 Oryza sativa Os01g0559300 AK064666.1 - Conserved hypothetical protein 1e-4 At4g26240 unknown protein C.G. S.X.
0.11 6e-6 52 Triticum aestivum TaAffx.29030.1.S1_at BJ286616 - - 3e-2 At4g26240 unknown protein C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1617472_at CB970516 hypothetical protein LOC100262721 - 1e+0 At2g10930 unknown protein C.G. S.X.
0.07 2e-7 56 Zea mays Zm.1437.1.A1_at CF635289 hypothetical protein LOC100193312 - 2e+0 At4g01220 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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