CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5438.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 84.2 Ptp.5438.1.S1_at CK106216 hypothetical protein - 1e-14 At1g80600 WIN1 (HOPW1-1-INTERACTING 1) S.X. H.G.
0.48 75.4 PtpAffx.122535.1.S1_at CX183941 - - 7e-5 At1g52760 esterase/lipase/thioesterase family protein S.X. H.G.
0.38 63.7 Ptp.4605.1.S1_at CK096656 hypothetical protein - 2e-3 At4g20850 TPP2 (TRIPEPTIDYL PEPTIDASE II) S.X. H.G.
0.32 55.2 Ptp.6370.3.S1_a_at CK091400 hypothetical protein - 6e+0 At3g23635 RTFL13 (ROTUNDIFOLIA LIKE 13) S.X. H.G.
0.30 52.0 PtpAffx.160091.2.A1_a_at CK089240 hypothetical protein - 7e-6 At5g24800 BZIP9 (BASIC LEUCINE ZIPPER 9) S.X. H.G.
0.27 47.1 PtpAffx.164072.1.S1_at BU896845 - - 4e-11 At5g49945 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 97.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.5 97.8 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.3 96.9 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 3e-148 525 Ptp.777.1.A1_at CV236864 - - 7e+0 At4g05530 IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) C.G. S.X.
0.14 6e-8 59 PtpAffx.113243.1.S1_at CX653809 hypothetical protein - 1e-3 At1g80600 WIN1 (HOPW1-1-INTERACTING 1) C.G. S.X.
0.02 6e-2 40 PtpAffx.121699.1.A1_at CV230184 hypothetical protein - 3e-17 At5g52960 unknown protein C.G. S.X.
0.02 2e-1 38 PtpAffx.203167.1.S1_at pmrna6276 hypothetical protein - 9e-5 At4g16510 YbaK/prolyl-tRNA synthetase-related C.G. S.X.
0.01 2e-1 38 Ptp.1897.1.S1_a_at AY660967.1 hypothetical protein - 4e-56 At5g49720 ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1) C.G. S.X.
0.02 9e-1 36 PtpAffx.36782.1.A1_s_at CV251407 hypothetical protein - 2e-31 At5g60640 ATPDIL1-4 (PDI-LIKE 1-4) C.G. S.X.
0.01 9e-1 36 PtpAffx.205046.1.S1_at pmrna9995 hypothetical protein - 4e-31 At5g60640 ATPDIL1-4 (PDI-LIKE 1-4) C.G. S.X.
0.02 9e-1 36 PtpAffx.17171.1.A1_at CV262115 hypothetical protein - 4e-23 At5g13070 MSF1-like family protein C.G. S.X.
0.02 9e-1 36 PtpAffx.11401.5.A1_at CV280789 hypothetical protein - 2e+0 At1g59590 ZCF37 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-14 81 Arabidopsis thaliana At1g80600 844399 WIN1 (HOPW1-1-INTERACTING 1) Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320). - - - C.G. S.X.
0.37 1e-18 95 Glycine max GmaAffx.92829.1.S1_s_at CF807177 - - 2e-18 At1g80600 WIN1 (HOPW1-1-INTERACTING 1) C.G. S.X.
0.11 8e-11 67 Hordeum vulgare Contig7023_at Contig7023 - - 3e+0 At5g65390 AGP7 C.G. S.X.
0.02 1e+0 36 Oryza sativa Os.49082.1.S1_at - - - 0 C.G. S.X.
0.05 1e-5 52 Triticum aestivum Ta.5321.1.S1_at CA666614 - - 3e+0 At5g65390 AGP7 C.G. S.X.
0.10 8e-7 54 Vitis vinifera 1609204_at CF607580 hypothetical protein LOC100242776 - 1e+0 At5g12240 unknown protein C.G. S.X.
0.02 7e-2 38 Zea mays Zm.16840.2.A1_a_at BM078188 hypothetical protein LOC100191351 - 5e-9 At5g27710 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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