Gene omics information

Query gene ID	Ptp.543.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	Ptp.543.1.A1_at	CK088475	-	-	4e+0	At3g09490	chloroplast lumen common family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.214257.1.S1_at	pmrna27740	hypothetical protein	-	8e-2	At2g02230	AtPP2-B1 (Phloem protein 2-B1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.208444.1.S1_at	pmrna16776	hypothetical protein	-	3e-1	At5g47790	forkhead-associated domain-containing protein / FHA domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.3429.2.S1_at	DN491388	hypothetical protein	-	2e+0	At5g04700	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.220669.1.S1_at	pmrna37079	hypothetical protein	-	4e+1	At5g51910	TCP family transcription factor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.213415.1.S1_at	pmrna26240	hypothetical protein	-	4e+0	At2g17870	cold-shock DNA-binding family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.8	99.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
8.9	98.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.6	98.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.3	98.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-49	196	PtpAffx.62777.1.A1_at	CV266384	hypothetical protein	-	4e-7	At3g54750	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	1e-13	77	PtpAffx.213374.1.S1_at	pmrna26169	hypothetical protein	-	2e-7	At5g06540	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.99492.1.S1_at	DN492131	-	-	1e+0	At4g13540	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.215655.1.S1_at	pmrna29959	hypothetical protein	-	3e+0	At5g61710	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.211580.1.S1_at	pmrna22694	hypothetical protein	-	5e+0	At5g11860	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.210515.1.S1_at	pmrna20623	hypothetical protein	-	1e-5	At1g74690	IQD31 (IQ-domain 31)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.202172.1.S1_at	pmrna4343	hypothetical protein	-	3e-167	At2g45540	WD-40 repeat family protein / beige-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	Ptp.6546.1.S1_s_at	CK110416	hypothetical protein	-	7e-6	At1g74690	IQD31 (IQ-domain 31)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e+0	32	PtpAffx.54013.1.S1_at	CF233803	hypothetical protein	-	3e-8	At1g55530	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At3g09490	820106	chloroplast lumen common family protein	F:binding;P:photosynthesis, light reaction;C:chloroplast thylakoid lumen;BOAPM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	GmaAffx.88478.2.S1_at	AW704592	-	-	2e-4	At3g08640	alphavirus core protein family	C.G.	S.X.	Please select
0.05	5e-1	34	Hordeum vulgare	HS08P16u_x_at	HS08P16u	-	-	7e+0	At5g10590	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	OsAffx.5380.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Triticum aestivum	Ta.6357.1.S1_at	BJ302894	-	-	1e+0	At3g62690	ATL5 (ATL5)	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1622029_at	CB979296	-	-	4e-1	At4g01250	WRKY22	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.269.1.A1_at	AI670397	-	-	3e+0	At5g09750	HEC3 (HECATE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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