CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5364.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 Ptp.5364.1.S1_s_at CK100365 hypothetical protein - 1e-1 At2g21140 ATPRP2 (PROLINE-RICH PROTEIN 2) S.X. H.G.
0.50 78.6 PtpAffx.12219.1.S1_s_at DN493460 hypothetical protein - 8e-7 At2g04570 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.32 55.2 PtpAffx.224655.1.S1_s_at pmrna43407 hypothetical protein - 8e-26 At1g25450 KCS5 (3-KETOACYL-COA SYNTHASE 5) S.X. H.G.
0.31 53.7 PtpAffx.78712.1.S1_a_at CV282607 hypothetical protein - 1e-1 At3g29800 AAA-type ATPase family S.X. H.G.
0.28 50.5 PtpAffx.7804.3.A1_a_at CV237357 hypothetical protein - 4e-1 At2g28755 UDP-D-glucuronate carboxy-lyase-related S.X. H.G.
0.14 23.5 PtpAffx.30556.2.S1_s_at CV226345 hypothetical protein - 1e-19 At1g55670 PSAG (PHOTOSYSTEM I SUBUNIT G) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 98.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.6 97.9 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.6 97.9 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7 94.7 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3 93.7 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3 93.7 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.93 0 967 Ptp.5364.1.S1_at CK100365 hypothetical protein - 1e-1 At2g21140 ATPRP2 (PROLINE-RICH PROTEIN 2) C.G. S.X.
0.49 4e-51 202 PtpAffx.71561.1.A1_at CK089548 hypothetical protein - 2e-1 At4g38770 PRP4 (PROLINE-RICH PROTEIN 4) C.G. S.X.
0.29 4e-51 202 PtpAffx.204285.1.S1_at pmrna8428 hypothetical protein - 1e-1 At2g21140 ATPRP2 (PROLINE-RICH PROTEIN 2) C.G. S.X.
0.29 4e-51 202 PtpAffx.204285.1.S1_s_at pmrna8428 hypothetical protein - 1e-1 At2g21140 ATPRP2 (PROLINE-RICH PROTEIN 2) C.G. S.X.
0.02 1e-1 38 PtpAffx.7200.1.S1_at CV225464 hypothetical protein - 1e-23 At4g26965 NADH:ubiquinone oxidoreductase family protein C.G. S.X.
0.02 5e-1 36 PtpAffx.45691.1.A1_a_at CV254974 hypothetical protein - 1e-25 At2g03350 unknown protein C.G. S.X.
0.02 5e-1 36 PtpAffx.215443.1.S1_at pmrna29638 hypothetical protein - 2e-1 At4g08570 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.02 5e-1 36 Ptp.1958.1.S1_s_at CK087977 hypothetical protein - 7e-43 At2g03350 unknown protein C.G. S.X.
0.02 5e-1 36 Ptp.1958.1.S1_at CK087977 hypothetical protein - 7e-43 At2g03350 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-1 38 Arabidopsis thaliana At2g21140 816649 ATPRP2 (PROLINE-RICH PROTEIN 2) Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques. - - - C.G. S.X.
0.07 9e-3 42 Glycine max Gma.10706.2.S1_s_at BI968467 - - 4e-1 At3g24250 glycine-rich protein C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig1487_at Contig1487 - - 3e-1 At5g24510 60s acidic ribosomal protein P1, putative C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.9154.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.107125.1.S1_s_at CA705627 - - 2e-1 At3g42310 unknown protein C.G. S.X.
0.05 5e-7 54 Vitis vinifera 1620976_at CK138149.1 - - 1e+0 At3g12130 KH domain-containing protein / zinc finger (CCCH type) family protein C.G. S.X.
0.03 7e-1 34 Zea mays Zm.15789.2.A1_at CF632627 - - 3e+0 At3g02885 GASA5 (GAST1 PROTEIN HOMOLOG 5) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage