CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5238.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 Ptp.5238.1.S1_s_at BU887108 hypothetical protein - 5e-28 At1g53400 unknown protein S.X. H.G.
0.50 78.6 Ptp.4771.1.S1_at BU893475 hypothetical protein - 1e-10 At4g19670 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.50 78.6 PtpAffx.215067.1.S1_at pmrna29028 hypothetical protein - 3e-5 At2g21120 unknown protein S.X. H.G.
0.33 57.5 PtpAffx.141519.1.S1_at AJ774599 hypothetical protein - 2e-120 At5g64070 PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) S.X. H.G.
0.26 45.2 PtpAffx.217931.1.S1_s_at pmrna33398 hypothetical protein - 9e-11 At1g17820 phosphoinositide binding S.X. H.G.
0.22 38.3 PtpAffx.201241.1.S1_s_at pmrna2464 hypothetical protein - 2e-13 At1g50730 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 95.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6 94.5 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1 93.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7 91.8 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4 90.4 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4 90.4 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 4e-82 305 PtpAffx.60868.1.S1_at CV240300 hypothetical protein - 7e-15 At1g53400 unknown protein C.G. S.X.
0.02 5e-1 36 PtpAffx.91663.1.S1_a_at DN490923 hypothetical protein - 3e-36 At1g09920 TRAF-type zinc finger-related C.G. S.X.
0.01 5e-1 36 PtpAffx.222485.1.S1_at pmrna39944 hypothetical protein - 1e-2 At3g46510 PUB13 (PLANT U-BOX 13) C.G. S.X.
0.01 2e+0 34 PtpAffx.56940.1.A1_at CV243741 hypothetical protein - 1e-2 At5g62900 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.221107.1.S1_at pmrna37704 hypothetical protein - 7e-17 At2g44880 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 2e+0 34 PtpAffx.213118.1.S1_at pmrna25669 - - 3e-19 At4g30825 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 2e+0 34 PtpAffx.211432.1.S1_at pmrna22399 hypothetical protein - 9e-3 At1g27461 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.205939.1.S1_at pmrna11783 hypothetical protein - 9e-29 At4g30825 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 2e+0 34 PtpAffx.16419.1.S1_at CX654747 hypothetical protein - 3e-1 At3g25640 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 5e-28 125 Arabidopsis thaliana At1g53400 841776 unknown protein F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MPFO - - - C.G. S.X.
0.27 6e-44 178 Glycine max Gma.4123.1.S1_at BG511670 - - 2e-21 At1g53400 unknown protein C.G. S.X.
0.19 1e-11 69 Hordeum vulgare Contig16370_at Contig16370 - - 3e-8 At5g45740 unknown protein C.G. S.X.
0.25 4e-30 133 Oryza sativa Os01g0731000 BE229290 - Conserved hypothetical protein 6e-12 At1g16960 unknown protein C.G. S.X.
0.28 5e-16 85 Triticum aestivum Ta.1862.3.S1_at CA644887 - - 8e-14 At1g53400 unknown protein C.G. S.X.
0.34 3e-76 284 Vitis vinifera 1612732_at CD714809 - - 2e-25 At1g53400 unknown protein C.G. S.X.
0.13 7e-1 34 Zea mays Zm.8820.1.A1_at BM075146 hypothetical protein LOC100274665 - 1e-10 At1g16960 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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