Gene omics information

Query gene ID	Ptp.5222.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	Ptp.5222.1.S1_s_at	CX182395	hypothetical protein	-	3e-17	At4g30690	translation initiation factor 3 (IF-3) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.201153.1.S1_at	pmrna2264	hypothetical protein	-	0	At5g08650	GTP-binding protein LepA, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.24602.4.A1_at	CV258674	hypothetical protein	-	5e-9	At3g07670	SET domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.9888.2.A1_a_at	CV277112	hypothetical protein	-	9e-2	At1g62790	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.900.1.A1_s_at	CK089332	hypothetical protein	-	1e-18	At4g30690	translation initiation factor 3 (IF-3) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.52156.2.A1_a_at	CV270967	-	-	6e-8	At5g03900	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	95.3	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	0	1225	Ptp.5222.1.S1_at	CX182395	hypothetical protein	-	3e-17	At4g30690	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	3e-80	299	PtpAffx.206530.1.S1_s_at	pmrna12956	hypothetical protein	-	4e-27	At4g30690	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	3e-80	299	PtpAffx.206530.1.S1_at	pmrna12956	hypothetical protein	-	4e-27	At4g30690	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	7e-47	188	Ptp.900.1.A1_s_at	CK089332	hypothetical protein	-	1e-18	At4g30690	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	1e-17	91	Ptp.7662.1.A1_s_at	CV254791	hypothetical protein	-	3e+0	At1g77765	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-2	40	PtpAffx.203022.1.S1_at	pmrna5982	hypothetical protein	-	1e-8	At4g17330	ATG2484-1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.98478.1.S1_s_at	BU872463	hypothetical protein	-	2e-2	At3g20850	proline-rich family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.200560.1.S1_at	pmrna1110	hypothetical protein	-	3e-30	At2g27900	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.11820.2.A1_at	CV264785	hypothetical protein	-	1e+0	At1g49800	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	3e-17	89	Arabidopsis thaliana	At4g30690	829192	translation initiation factor 3 (IF-3) family protein	F:translation initiation factor activity;P:translational initiation;C:cell wall, chloroplast;BOMPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	4e-42	173	Glycine max	Gma.15879.3.S1_a_at	BM270489	-	-	2e-32	At4g30690	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please select
0.03	8e-1	34	Hordeum vulgare	HVSMEg0002C06r2_s_at	HVSMEg0002C06r2	-	-	8e-1	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	C.G.	S.X.	Please select
0.03	9e-1	36	Oryza sativa	Os06g0143100	AK061597.1	-	Hypothetical protein	4e+0	At3g18510	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Triticum aestivum	TaAffx.113972.3.S1_at	BJ211782	-	-	7e-5	At1g55200	protein kinase family protein	C.G.	S.X.	Please select
0.21	2e-22	105	Vitis vinifera	1611828_s_at	CB342309	hypothetical protein LOC100243384	-	1e-3	At2g24060	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.11587.1.A1_at	BM379162	-	-	3e-1	At1g62760	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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