CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.51.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 Ptp.51.1.A1_at CV257322 hypothetical protein - 3e-9 At5g12310 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.67 91.1 Ptp.1557.2.S1_s_at BI120353 - - 1e-3 At4g17730 SYP23 (SYNTAXIN OF PLANTS 23) S.X. H.G.
0.60 86.0 Ptp.4875.1.A1_a_at CV283196 hypothetical protein - 4e-4 At4g13020 MHK S.X. H.G.
0.57 84.2 Ptp.2171.1.S1_a_at CV227774 hypothetical protein - 3e-32 At3g12560 TRFL9 (TRF-LIKE 9) S.X. H.G.
0.36 61.6 PtpAffx.135.1.S1_a_at DN486180 hypothetical protein - 4e-5 At5g61500 ATG3 S.X. H.G.
0.10 16.3 PtpAffx.135882.1.A1_at CV281275 hypothetical protein - 1e-7 At1g78420 protein binding / zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 96.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 1e-172 607 PtpAffx.72203.2.S1_at CK102413 hypothetical protein - 3e-4 At5g12310 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.61 2e-155 549 PtpAffx.72203.1.S1_at CF233869 hypothetical protein - 4e-8 At5g12310 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.20 1e-18 95 PtpAffx.72203.3.S1_at CV257754 hypothetical protein - 6e-1 At1g80040 unknown protein C.G. S.X.
0.06 2e-4 48 PtpAffx.141112.1.A1_at CV225663 - - 4e+0 At3g43480 - C.G. S.X.
0.02 8e-1 36 PtpAffx.55795.1.A1_at CV276880 hypothetical protein - 2e+0 At1g30845 unknown protein C.G. S.X.
0.02 8e-1 36 PtpAffx.101361.1.S1_at CV267797 - - 8e-1 At5g63330 - C.G. S.X.
0.02 8e-1 36 Ptp.3846.1.S1_s_at CV273433 - - 9e-3 At4g17030 ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) C.G. S.X.
0.02 8e-1 36 Ptp.3846.1.S1_at CV273433 hypothetical protein - 9e-3 At4g17030 ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) C.G. S.X.
0.02 3e+0 34 PtpAffx.56949.1.A1_at CV244703 hypothetical protein - 1e-1 At1g03470 kinase interacting family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 3e-9 63 Arabidopsis thaliana At5g12310 831106 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF - - - C.G. S.X.
0.22 9e-47 188 Glycine max GmaAffx.8213.2.S1_at BG154892 - - 6e-15 At5g12310 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig17131_at Contig17131 - - 4e+0 At5g44650 unknown protein C.G. S.X.
0.07 3e-4 48 Oryza sativa Os01g0954400 AK065709.1 - Zn-finger, RING domain containing protein 7e-4 At5g12310 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.36907.1.A1_at BJ308846 - - 4e+0 At3g23360 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.07 3e-6 52 Vitis vinifera 1621596_at CB974144 hypothetical protein LOC100260248 - 1e-3 At5g12310 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 4e+0 32 Zea mays Zm.6560.2.A1_at CO521342 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 - 2e+0 At1g51260 LPAT3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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