CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5085.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 Ptp.5085.1.S1_s_at CV227488 hypothetical protein - 3e-36 At1g76140 serine-type endopeptidase/ serine-type peptidase S.X. H.G.
0.78 95.1 PtpAffx.48155.1.S1_at CV245590 GRAS family transcription factor - 6e-7 At5g52510 scarecrow-like transcription factor 8 (SCL8) S.X. H.G.
0.63 88.1 PtpAffx.203117.1.S1_at pmrna6177 hypothetical protein - 3e-90 At4g19040 EDR2 S.X. H.G.
0.63 88.1 PtpAffx.207094.1.S1_at pmrna14061 hypothetical protein - 3e-65 At5g65290 LMBR1 integral membrane family protein S.X. H.G.
0.63 88.1 Ptp.399.1.A1_at CK088846 hypothetical protein - 3e-8 At3g61160 shaggy-related protein kinase beta / ASK-beta (ASK2) S.X. H.G.
0.55 82.2 PtpAffx.208606.1.S1_s_at pmrna17078 hypothetical protein - 2e-10 At3g23980 unknown protein S.X. H.G.
0.53 80.5 PtpAffx.84285.1.A1_at CV272014 hypothetical protein - 5e-1 At5g05110 cysteine protease inhibitor, putative / cystatin, putative S.X. H.G.
0.50 78.6 PtpAffx.145915.1.S1_at BU815760 hypothetical protein - 2e-50 At2g07180 protein kinase, putative S.X. H.G.
0.38 63.7 PtpAffx.161323.1.S1_a_at CX186124 hypothetical protein - 1e-53 At4g31750 WIN2 (HOPW1-1-INTERACTING 2) S.X. H.G.
0.27 47.1 PtpAffx.200596.1.S1_s_at pmrna1178 amino acid transporter /// amino acid transporter /// amino acid transporter - 6e-26 At1g80510 amino acid transporter family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.0 99.6 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
13.0 99.4 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
10.5 99.0 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7 85.5 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 0 898 PtpAffx.92678.1.S1_at CV265827 hypothetical protein - 2e-57 At1g76140 serine-type endopeptidase/ serine-type peptidase C.G. S.X.
0.65 0 666 PtpAffx.92678.3.S1_at CV245734 hypothetical protein - 1e-6 At1g76140 serine-type endopeptidase/ serine-type peptidase C.G. S.X.
0.80 0 652 PtpAffx.92678.2.A1_a_at CV261170 - - 7e-27 At1g76140 serine-type endopeptidase/ serine-type peptidase C.G. S.X.
0.45 9e-68 258 Ptp.4141.1.S1_at BU834892 hypothetical protein - 4e-9 At1g76140 serine-type endopeptidase/ serine-type peptidase C.G. S.X.
0.02 2e+0 34 PtpAffx.94786.1.A1_at CV271627 - - 5e-26 At3g54610 GCN5 C.G. S.X.
0.02 2e+0 34 PtpAffx.43118.2.S1_at DN486789 nbs-lrr resistance protein /// nbs-lrr resistance protein /// tir-nbs-lrr resistance protein /// hypothetical protein /// hypothetical protein /// tir-nbs-lrr resistance protein /// tir-nbs-lrr resistance protein /// hypothetical protein - 4e-1 At3g49690 MYB84 (MYB DOMAIN PROTEIN 84) C.G. S.X.
0.02 2e+0 34 PtpAffx.223127.1.S1_at pmrna40974 AP2/ERF domain-containing transcription factor - 1e-1 At4g00670 DNA binding C.G. S.X.
0.02 2e+0 34 PtpAffx.210626.1.S1_at pmrna20844 GRAS family transcription factor - 2e+0 At5g41920 scarecrow transcription factor family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.203389.1.S1_at pmrna6744 - - 3e-3 At5g13960 SUVH4 (SU(VAR)3-9 HOMOLOG 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 3e-36 153 Arabidopsis thaliana At1g76140 843946 serine-type endopeptidase/ serine-type peptidase F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:chloroplast;OBMPAF - - - C.G. S.X.
0.36 3e-46 186 Glycine max Gma.8162.1.S1_at BI316525 - - 7e-31 At1g76140 serine-type endopeptidase/ serine-type peptidase C.G. S.X.
0.14 4e-15 81 Hordeum vulgare Contig15056_at Contig15056 - - 3e-17 At1g20380 prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative C.G. S.X.
0.09 8e-29 129 Oryza sativa Os01g0108200 AK071405.1 - Prolyl endopeptidase (EC 3.4.21.26) (Post-prolinecleaving enzyme) (PE) 3e-17 At1g76140 serine-type endopeptidase/ serine-type peptidase C.G. S.X.
0.15 3e-8 59 Triticum aestivum Ta.21279.1.S1_s_at CA613838 - - 8e-14 At1g20380 prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative C.G. S.X.
0.40 3e-76 284 Vitis vinifera 1619547_at CD719431 - - 2e-39 At1g20380 prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative C.G. S.X.
0.12 2e-26 119 Zea mays Zm.9529.1.A1_at CA399003 hypothetical protein LOC100191488 - 3e-35 At1g20380 prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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