CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5068.1.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 Ptp.5068.1.S1_a_at DN483716 hypothetical protein - 6e-3 At3g29170 unknown protein S.X. H.G.
0.71 92.6 Ptp.5068.2.A1_a_at CV247817 hypothetical protein - 6e-3 At3g29170 unknown protein S.X. H.G.
0.57 84.2 PtpAffx.134721.1.S1_at CV256564 hypothetical protein - 3e-71 At5g24520 TTG1 (TRANSPARENT TESTA GLABRA 1) S.X. H.G.
0.50 78.6 PtpAffx.7148.1.S1_at CV265829 - - 2e-25 At3g30390 amino acid transporter family protein S.X. H.G.
0.50 78.6 PtpAffx.249.310.S1_at BU830668 hypothetical protein - 4e-12 At5g42050 - S.X. H.G.
0.47 74.6 PtpAffx.112916.1.A1_at CV255627 hypothetical protein - 1e-7 At1g76920 F-box family protein (FBX3) S.X. H.G.
0.35 59.7 Ptp.7379.2.A1_a_at CV265090 hypothetical protein - 1e-32 At1g22280 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.31 53.7 PtpAffx.5250.1.A1_a_at CV255920 hypothetical protein - 1e+0 At5g65130 AP2 domain-containing transcription factor, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.9 98.4 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0 95.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6 94.5 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.94 0 852 Ptp.5068.2.A1_a_at CV247817 hypothetical protein - 6e-3 At3g29170 unknown protein C.G. S.X.
0.17 6e-13 75 PtpAffx.213328.1.S1_at pmrna26069 hypothetical protein - 3e+0 At3g23610 dual specificity protein phosphatase (DsPTP1) C.G. S.X.
0.03 1e-1 38 PtpAffx.206395.1.S1_at pmrna12706 hypothetical protein - 6e-2 At2g40780 RNA binding / translation initiation factor C.G. S.X.
0.02 5e-1 36 PtpAffx.73977.1.S1_at DN488140 - - 5e-1 At5g27810 sequence-specific DNA binding / transcription factor C.G. S.X.
0.02 5e-1 36 PtpAffx.50986.1.S1_at CV235492 hypothetical protein - 1e-11 At2g22080 unknown protein C.G. S.X.
0.02 5e-1 36 PtpAffx.209126.1.S1_at pmrna18056 hypothetical protein - 7e-1 At2g03470 myb family transcription factor / ELM2 domain-containing protein C.G. S.X.
0.01 5e-1 36 PtpAffx.202628.1.S1_at pmrna5251 hypothetical protein - 2e-3 At1g06145 EMB1444 (EMBRYO DEFECTIVE 1444) C.G. S.X.
0.02 5e-1 36 PtpAffx.118982.1.S1_at CA930199 - - 5e-4 At1g72520 lipoxygenase, putative C.G. S.X.
0.02 2e+0 34 PtpAffx.217290.1.S1_at pmrna32489 hypothetical protein - 4e-1 At4g24950 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 6e-3 42 Arabidopsis thaliana At3g29170 822567 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO - - - C.G. S.X.
0.16 1e-10 67 Glycine max Gma.15013.1.S1_at CD413694 - - 2e+0 At2g19770 PRF5 (PROFILIN5) C.G. S.X.
0.04 7e-1 34 Hordeum vulgare HV_CEb0018K02f_x_at HV_CEb0018K02f - - 1e+0 At1g21323 unknown protein C.G. S.X.
0.02 7e-1 36 Oryza sativa OsAffx.447.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.111313.1.S1_at CA643579 - - 1e+0 At5g42655 - C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1620536_at CF200887.1 - - 7e-2 At3g49630 2-oxoacid-dependent oxidase, putative C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.498.1.A1_at AI691679 - - 3e+0 At4g30730 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage