CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.4967.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 Ptp.4967.1.A1_at CV228163 hypothetical protein - 2e-20 At5g51430 EYE (EMBRYO YELLOW) S.X. H.G.
0.67 91.1 PtpAffx.9076.1.A1_at CV252324 hypothetical protein - 1e-30 At2g43070 protease-associated (PA) domain-containing protein S.X. H.G.
0.36 61.6 PtpAffx.98987.1.S1_s_at DN500449 hypothetical protein - 1e+0 At5g16453 - S.X. H.G.
0.33 57.5 PtpAffx.26755.1.S1_at CK318492 - - 5e-59 At5g20570 RBX1 (RING-BOX 1) S.X. H.G.
0.33 57.5 PtpAffx.123212.1.S1_at CF236190 hypothetical protein - 5e-34 At4g01400 - S.X. H.G.
0.29 50.5 PtpAffx.211162.1.S1_at pmrna21942 hypothetical protein - 5e-14 At5g54520 WD-40 repeat family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.4 95.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1 88.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 36 PtpAffx.9094.2.S1_at CV260816 fasciclin-like arabinogalactan protein 12.2 - 1e-11 At2g04780 FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7) C.G. S.X.
0.02 4e-1 36 PtpAffx.17757.1.S1_at CV273959 hypothetical protein - 3e-37 At3g02420 unknown protein C.G. S.X.
0.04 4e-1 36 Ptp.1255.1.S1_at CK092064 hypothetical protein - 7e-1 At2g44910 ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4) C.G. S.X.
0.02 2e+0 34 PtpAffx.5430.1.S1_at CF228221 hypothetical protein - 1e-103 At1g19910 AVA-P2 C.G. S.X.
0.02 2e+0 34 PtpAffx.5430.1.S1_x_at CF228221 hypothetical protein - 1e-103 At1g19910 AVA-P2 C.G. S.X.
0.03 2e+0 34 PtpAffx.202136.1.S1_at pmrna4269 hypothetical protein - 2e-28 At5g51380 F-box family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.202136.1.S1_x_at pmrna4269 hypothetical protein - 2e-28 At5g51380 F-box family protein C.G. S.X.
0.02 6e+0 32 PtpAffx.53729.1.A1_at CK097059 - - 3e-5 At1g44900 ATP binding / DNA binding / DNA-dependent ATPase C.G. S.X.
0.01 6e+0 32 PtpAffx.225441.1.S1_at pmrna44794 hypothetical protein - 4e-1 At3g53240 AtRLP45 (Receptor Like Protein 45) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-20 99 Arabidopsis thaliana At5g51430 835217 EYE (EMBRYO YELLOW) Encodes a protein that is homologous to Cog7, a subunit of the conserved oligomeric Golgi (COG) complex, which is required for the normal morphology and function of the Golgi apparatus. It is likely to be involved in transport or retention of Golgi-localized proteins and in maintenance of Golgi morphology. - - - C.G. S.X.
0.38 1e-38 161 Glycine max GmaAffx.61157.1.S1_at BU550271 - - 3e-23 At5g51430 EYE (EMBRYO YELLOW) C.G. S.X.
0.11 6e-7 54 Hordeum vulgare Contig14245_at Contig14245 - - 4e-1 At5g25190 ethylene-responsive element-binding protein, putative C.G. S.X.
0.05 2e-6 54 Oryza sativa Os06g0669500 9634.m04454 - Hypothetical protein 3e-17 At5g51430 EYE (EMBRYO YELLOW) C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.31829.1.S1_at CA607038 - - 1e+1 At4g14465 DNA-binding protein-related C.G. S.X.
0.08 1e-28 125 Vitis vinifera 1620946_a_at CB348039 hypothetical protein LOC100246409 - 1e-9 At5g51430 EYE (EMBRYO YELLOW) C.G. S.X.
0.07 9e-9 59 Zea mays Zm.15419.1.S1_at AY108100.1 hypothetical protein LOC100193995 - 2e-4 At5g51430 EYE (EMBRYO YELLOW) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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