Gene omics information

Query gene ID	Ptp.4952.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	Ptp.4952.1.S1_at	CV228949	hypothetical protein	-	4e-89	At1g59900	AT-E1 ALPHA	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.7276.1.S1_at	CV247092	hypothetical protein	-	3e-8	At3g48140	senescence-associated protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.198.1.A1_at	CV259081	-	-	1e+0	At1g25260	acidic ribosomal protein P0-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.57186.1.A1_a_at	CV233728	hypothetical protein /// gdp-mannose 4,6-dehydratase	-	8e-49	At3g51160	MUR1 (MURUS 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.217249.1.S1_at	pmrna32436	hypothetical protein	-	5e-97	At4g27690	VPS26B (VACUOLAR PROTEIN SORTING 26B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.249.708.A1_s_at	CV258093	hypothetical protein	-	1e+1	Atcg00380	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.0	99.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
9.3	98.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
8.6	98.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	1193	PtpAffx.115372.1.S1_at	BP936271	hypothetical protein	-	1e-54	At1g59900	AT-E1 ALPHA	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.218016.1.S1_x_at	pmrna33515	hypothetical protein	-	4e-5	At1g61560	MLO6 (MILDEW RESISTANCE LOCUS O 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.218016.1.S1_at	pmrna33515	hypothetical protein	-	4e-5	At1g61560	MLO6 (MILDEW RESISTANCE LOCUS O 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.60774.1.S1_at	CK090812	-	-	7e-6	At5g08010	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.208229.1.S1_at	pmrna16376	hypothetical protein	-	4e-1	At4g35987	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	34	PtpAffx.74405.1.S1_at	CF233474	hypothetical protein	-	2e-11	At5g12120	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	34	PtpAffx.223438.1.S1_at	pmrna41448	hypothetical protein	-	2e-17	At2g33490	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	34	PtpAffx.222314.1.S1_at	pmrna39640	hypothetical protein	-	8e-4	At5g43620	S-locus protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	34	PtpAffx.208849.1.S1_at	pmrna17547	histidine kinase cytokinin receptor	-	5e-65	At2g01830	WOL (WOODEN LEG)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	4e-89	329	Arabidopsis thaliana	At1g59900	842284	AT-E1 ALPHA	encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	1e-92	341	Glycine max	Gma.10016.1.S1_at	CA852632	-	-	1e-81	At1g59900	AT-E1 ALPHA	C.G.	S.X.	Please select
0.27	2e-37	157	Hordeum vulgare	Contig5770_s_at	Contig5770	-	-	5e-42	At1g59900	AT-E1 ALPHA	C.G.	S.X.	Please select
0.29	1e-28	129	Oryza sativa	Os02g0739600	AK098950.1	-	Pyruvate dehydrogenase E1 alpha subunit (EC1.2.4.1)	5e-45	At1g59900	AT-E1 ALPHA	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	1e-30	135	Triticum aestivum	Ta.14420.1.S1_at	BT008951.1	-	-	8e-29	At1g59900	AT-E1 ALPHA	C.G.	S.X.	Please select
0.42	3e-90	331	Vitis vinifera	1613796_at	CB975249	hypothetical protein LOC100263880	-	3e-80	At1g59900	AT-E1 ALPHA	C.G.	S.X.	Please select
0.28	3e-29	129	Zea mays	Zm.4776.1.S1_at	CF637191	Pyruvate dehydrogenase E1 alpha subunit	-	8e-35	At1g59900	AT-E1 ALPHA	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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