Gene omics information

Query gene ID	Ptp.4898.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	Ptp.4898.1.S1_at	BI126840	-	-	1e-16	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	Ptp.7649.1.S1_at	BI125474	cinnamyl alcohol dehydrogenase-like protein	-	5e-6	At4g37970	CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.26369.3.S1_s_at	CK104729	hypothetical protein	-	2e+0	At2g34160	nucleic acid binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	Ptp.4880.1.S1_at	CK089952	-	-	1e+0	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.4669.4.S1_at	BU811735	-	-	5e+0	At5g63580	FLS2 (FLAVONOL SYNTHASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.5976.1.S1_at	CF230441	-	-	2e+0	At4g12480	pEARLI 1	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.5	99.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
15.0	99.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
14.4	99.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
13.9	99.4	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.2	98.1	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.0	98.0	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.4	97.7	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.9	97.4	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.1	42.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	702	PtpAffx.154303.1.S1_s_at	CX179495	hypothetical protein	-	5e-29	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.61	3e-120	432	Ptp.4898.3.S1_at	BP931539	-	-	3e+0	At2g15327	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.56	1e-116	420	Ptp.5092.1.S1_at	CV240783	-	-	3e-8	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.51	2e-112	406	Ptp.4898.2.S1_at	BP932483	-	-	2e-5	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	6e-63	242	Ptp.5279.1.S1_at	BU808930	hypothetical protein	-	9e-74	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-2	42	PtpAffx.203145.1.S1_at	pmrna6231	hypothetical protein	-	1e-30	At5g45300	BMY2 (BETA-AMYLASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.159290.1.A1_at	CV279305	hypothetical protein	-	2e-2	At3g57990	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.101219.1.A1_a_at	CV273047	hypothetical protein	-	1e+0	At4g39060	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.32299.1.S1_at	CV233360	hypothetical protein	-	3e-14	At4g38960	zinc finger (B-box type) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	1e-16	87	Arabidopsis thaliana	At4g17090	827419	CT-BMY (CHLOROPLAST BETA-AMYLASE)	Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	5e-20	99	Glycine max	GmaAffx.89961.1.S1_s_at	CF805686	beta-amylase	-	5e-15	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	C.G.	S.X.	Please select
0.02	2e-1	36	Hordeum vulgare	Contig25838_at	Contig25838	-	-	2e-17	At3g24180	catalytic/ glucosylceramidase	C.G.	S.X.	Please select
0.02	1e+1	32	Oryza sativa	OsAffx.3202.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e+0	32	Triticum aestivum	Ta.28778.1.S1_at	AJ604461	-	-	7e-1	At1g64340	unknown protein	C.G.	S.X.	Please select
0.35	3e-58	224	Vitis vinifera	1611808_at	CF205006.1	-	-	2e-25	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.1633.1.S1_at	CF636961	fiber protein Fb34	-	5e-7	At1g13380	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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