CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.4852.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 91.7 Ptp.4852.1.A1_at CV282615 hypothetical protein - 5e-22 At5g50100 - S.X. H.G.
0.50 78.6 Ptp.4852.1.A1_s_at CV282615 hypothetical protein - 5e-22 At5g50100 - S.X. H.G.
0.47 74.6 PtpAffx.39416.1.A1_at CV254535 hypothetical protein - 2e+0 At1g22750 unknown protein S.X. H.G.
0.46 73.7 Ptp.5158.1.S1_x_at CK090943 1-aminocyclopropane-1-carboxylate - 3e-34 At1g12010 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative S.X. H.G.
0.40 67.0 PtpAffx.9234.1.A1_s_at BI122577 hypothetical protein - 9e-3 At5g18140 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.36 61.6 PtpAffx.24871.1.A1_at CV243107 - - 4e-1 At3g63250 HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2) S.X. H.G.
0.32 55.2 PtpAffx.49041.1.S1_at CV265070 hypothetical protein - 3e-84 At1g08510 FATB (fatty acyl-ACP thioesterases B) S.X. H.G.
0.32 55.2 PtpAffx.17383.2.A1_s_at CV283276 hypothetical protein - 8e-12 At2g45740 PEX11D S.X. H.G.
0.30 52.0 PtpAffx.58773.1.A1_at CK091196 hypothetical protein - 4e-16 At1g78290 - S.X. H.G.
0.26 45.2 PtpAffx.7188.1.A1_at CK107538 hypothetical protein - 2e+0 At2g18660 EXLB3 (EXPANSIN-LIKE B3 PRECURSOR) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.0 98.4 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.3 98.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.5 97.8 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.3 97.7 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.6 97.2 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5 96.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 1594 Ptp.4852.1.A1_s_at CV282615 hypothetical protein - 5e-22 At5g50100 - C.G. S.X.
0.57 0 1031 PtpAffx.35215.1.S1_at CA930667 hypothetical protein - 7e-16 At5g50100 - C.G. S.X.
0.30 4e-45 182 PtpAffx.119160.1.A1_at DN490470 - - 1e+0 At2g38304 unknown protein C.G. S.X.
0.04 4e-2 40 PtpAffx.208890.1.S1_at pmrna17639 hypothetical protein - 2e+0 At5g09750 HEC3 (HECATE 3) C.G. S.X.
0.02 2e+0 34 PtpAffx.86796.1.A1_at DN490220 hypothetical protein - 1e-14 At2g26180 IQD6 (IQ-domain 6) C.G. S.X.
0.02 2e+0 34 PtpAffx.4986.1.S1_s_at CX660319 hypothetical protein - 5e-7 At5g24610 unknown protein C.G. S.X.
0.03 2e+0 34 PtpAffx.211696.1.S1_at pmrna22924 hypothetical protein - 1e+0 At1g51200 zinc finger (AN1-like) family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.208879.1.S1_at pmrna17605 - - 2e-11 At1g23180 armadillo/beta-catenin repeat family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.206669.1.S1_s_at pmrna13234 hypothetical protein - 3e-21 At2g26180 IQD6 (IQ-domain 6) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 5e-22 105 Arabidopsis thaliana At5g50100 835074 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM - - - C.G. S.X.
0.26 4e-39 163 Glycine max GmaAffx.32901.3.S1_at BU579272 - - 9e-1 At3g09750 unknown protein C.G. S.X.
0.16 3e-19 95 Hordeum vulgare Contig8838_at Contig8838 - - 8e-3 At5g50100 - C.G. S.X.
0.23 6e-8 59 Oryza sativa Os04g0668800 AY224471.1 - Putative thiol-disulphide oxidoreductase DCCfamily protein 1e-7 At5g50100 - C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.122153.2.S1_at CA687350 - - 8e-1 At2g32840 proline-rich family protein C.G. S.X.
0.32 7e-62 236 Vitis vinifera 1609721_at CA813771 hypothetical protein LOC100250132 - 4e-14 At5g50100 - C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.1063.1.A1_at AI881959 - - 8e-1 At1g52415 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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