CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.4830.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 73.7 Ptp.4830.1.S1_at CX282622 hypothetical protein - 2e-13 At4g03260 leucine-rich repeat family protein S.X. H.G.
0.60 86.0 Ptp.6007.1.S1_at CK090586 hypothetical protein - 6e-22 At3g63260 ATMRK1 S.X. H.G.
0.50 78.6 PtpAffx.66249.1.S1_at CK095129 hypothetical protein - 8e-6 At1g79160 unknown protein S.X. H.G.
0.44 71.9 Ptp.8005.1.S1_at DN503222 hypothetical protein - 4e-1 At5g35180 phosphoinositide binding S.X. H.G.
0.42 68.6 PtpAffx.138124.1.S1_s_at BI120454 hypothetical protein - 3e-54 At3g22750 protein kinase, putative S.X. H.G.
0.40 67.0 PtpAffx.25513.1.A1_at DN484974 magnesium transporter - 3e-5 At2g03620 magnesium transporter CorA-like family protein (MRS2-5) S.X. H.G.
0.36 61.6 PtpAffx.34911.2.A1_at CK094204 hypothetical protein - 1e+0 At1g20310 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.9 99.2 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.7 98.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9 95.1 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7 94.7 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0 92.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 9e-121 434 PtpAffx.142582.1.A1_at CK090941 hypothetical protein - 2e-3 At4g03260 leucine-rich repeat family protein C.G. S.X.
0.44 5e-73 276 PtpAffx.161765.1.S1_at CK101256 hypothetical protein - 2e-2 At4g37925 NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex) C.G. S.X.
0.01 8e-1 36 PtpAffx.213761.1.S1_s_at pmrna26871 hypothetical protein - 2e-22 At2g30720 thioesterase family protein C.G. S.X.
0.02 8e-1 36 PtpAffx.205454.1.S1_at pmrna10785 hypothetical protein - 8e-6 At1g28220 ATPUP3 C.G. S.X.
0.02 8e-1 36 PtpAffx.205454.1.S1_s_at pmrna10785 hypothetical protein - 8e-6 At1g28220 ATPUP3 C.G. S.X.
0.01 8e-1 36 PtpAffx.200640.1.S1_at pmrna1245 hypothetical protein - 3e-17 At3g16270 - C.G. S.X.
0.01 8e-1 36 PtpAffx.200640.1.S1_s_at pmrna1245 hypothetical protein - 3e-17 At3g16270 - C.G. S.X.
0.02 8e-1 36 PtpAffx.142955.1.S1_at CN521359 hypothetical protein - 1e-4 At1g67740 PSBY C.G. S.X.
0.01 3e+0 34 PtpAffx.202240.1.S1_at pmrna4491 hypothetical protein - 3e-17 At4g01210 transferase, transferring glycosyl groups C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-13 77 Arabidopsis thaliana At4g03260 828003 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA - - - C.G. S.X.
0.22 2e-26 121 Glycine max Gma.4276.1.S1_at BE658888 - - 1e-11 At4g03260 leucine-rich repeat family protein C.G. S.X.
0.05 3e-4 46 Hordeum vulgare Contig10911_at Contig10911 - - 6e-1 At2g44820 unknown protein C.G. S.X.
0.02 1e+0 36 Oryza sativa Os01g0624500 AF192467.1 - Sgt1 5e-14 At4g11260 SGT1B C.G. S.X.
0.03 4e-2 40 Triticum aestivum Ta.12255.1.A1_at BQ171955 - - 5e-2 At2g02060 transcription factor C.G. S.X.
0.38 2e-59 228 Vitis vinifera 1609681_at CB346928 hypothetical protein LOC100257895 - 6e-4 At4g03260 leucine-rich repeat family protein C.G. S.X.
0.03 3e-1 36 Zea mays Zm.10681.1.A1_at BQ538977 hypothetical protein LOC100274399 - 4e+0 At2g29870 major intrinsic family protein / MIP family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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