Gene omics information

Query gene ID Ptp.4827.1.S1_a_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8697.4Ptp.4827.1.S1_a_atDN490862hypothetical protein-3e-12At5g434502-oxoglutarate-dependent dioxygenase, putativeS.X.H.G.
0.8196.1Ptp.1053.1.A1_atCK090255histone deacetylase-3e-3At4g33470hda14 (histone deacetylase 14)S.X.H.G.
0.7794.9Ptp.6035.1.S1_atCK093865hypothetical protein-2e+0At5g14110unknown proteinS.X.H.G.
0.7292.7Ptp.6017.2.S1_atCV277478hypothetical protein-3e-34At3g15840PIFI (post-illumination chlorophyll fluorescence increase)S.X.H.G.
0.7192.6Ptp.5156.1.S1_atBU815588hypothetical protein-9e-8At3g47650bundle-sheath defective protein 2 family / bsd2 familyS.X.H.G.
0.7192.6PtpAffx.94770.1.A1_atCV281703hypothetical protein-2e-27At1g78780pathogenesis-related family proteinS.X.H.G.
0.7192.6PtpAffx.79261.1.S1_a_atDN487076hypothetical protein-3e-49At3g19900unknown proteinS.X.H.G.
0.6891.3PtpAffx.54856.1.S1_atDN485617tir-nbs-lrr resistance protein /// hypothetical protein /// tir-nbs-lrr resistance protein /// nbs-lrr resistance protein-8e+0At5g10336unknown proteinS.X.H.G.
0.6588.6PtpAffx.62386.1.A1_atCV232995--2e+0At5g23090NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)S.X.H.G.
0.6588.6Ptp.7780.1.S1_atDN499145precursor of transferase serine hydroxymethyltransferase 7-7e-11At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.899.7GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
19.399.7GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
15.899.6GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
9.298.8GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
4.095.3GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.995.1GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
3.494.0GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.389.8GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.289.3GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
1.583.5GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.451e-49198Ptp.1944.1.S1_atBU815410hypothetical protein-5e-2At5g59540oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.451e-49198Ptp.1944.1.S1_s_atBU815410hypothetical protein-5e-2At5g59540oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.167e-29129PtpAffx.20875.1.A1_atBP935619hypothetical protein-1e+0At5g434502-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.366e-1789PtpAffx.203996.1.S1_atpmrna7884hypothetical protein-4e-2At1g50960GA2OX7 (GIBBERELLIN 2-OXIDASE 7)C.G.S.X.
0.196e-859PtpAffx.202540.1.S1_atpmrna5088hypothetical protein-6e-2At1g12440zinc finger (AN1-like) family proteinC.G.S.X.
0.041e-552PtpAffx.205752.1.S1_atpmrna11355hypothetical protein-3e+0At5g37990S-adenosylmethionine-dependent methyltransferase/ methyltransferaseC.G.S.X.
0.042e-448PtpAffx.98197.1.S1_s_atBU887960hypothetical protein-7e-2At1g034102A6C.G.S.X.
0.032e-448PtpAffx.211009.1.S1_atpmrna21633hypothetical protein-3e-2At3g614002-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.053e-344PtpAffx.202542.1.S1_atpmrna5093hypothetical protein-5e-1At3g60290oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.073e-1273Arabidopsis thalianaAt5g434508343652-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to ACC oxidase---C.G.S.X.
0.079e-446Glycine maxGmaAffx.75577.1.S1_atAW279266--1e-9At1g066202-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.033e-136Hordeum vulgareContig22467_atContig22467--7e-1At1g0940012-oxophytodienoate reductase, putativeC.G.S.X.
0.035e-654Oryza sativaOs04g0182200AK067970.1--2e-4At5g05600oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.047e-756Triticum aestivumTa.11292.1.A1_atCA646718--5e-3At4g16330oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsC.G.S.X.
0.024e-238Vitis vinifera1615291_atBQ793258hypothetical protein LOC100265858-3e-8At3g05100-C.G.S.X.
0.032e+130Zea maysZmAffx.1036.1.A1_atAI881726--1e-1At2g43795unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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