CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.4795.1.S1_s_at

Gene name nbs-lrr resistance protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.36 61.6 Ptp.4795.1.S1_s_at CA925817 nbs-lrr resistance protein - 2e-3 At5g04720 ADR1-L2 (ADR1-like 2) S.X. H.G.
0.73 93.6 PtpAffx.23759.1.S1_s_at CX173491 hypothetical protein - 1e-9 At2g22660 - S.X. H.G.
0.73 93.6 PtpAffx.122118.1.S1_s_at CN192978 hypothetical protein - 2e-1 At2g46030 UBC6 (ubiquitin-conjugating enzyme 6) S.X. H.G.
0.67 91.1 PtpAffx.71409.1.A1_s_at CK096309 hypothetical protein - 4e-1 At4g30740 unknown protein S.X. H.G.
0.57 84.2 PtpAffx.32354.2.S1_s_at CN524201 hypothetical protein - 2e-34 At2g19900 ATNADP-ME1 (NADP-malic enzyme 1) S.X. H.G.
0.50 78.6 PtpAffx.32354.1.S1_s_at CV254997 hypothetical protein - 8e-21 At5g11670 ATNADP-ME2 (NADP-malic enzyme 2) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.9 98.7 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
8.1 98.5 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.7 97.9 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.4 97.7 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.2 95.6 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0 95.3 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9 92.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 958 Ptp.4795.1.S1_at CA925817 nbs-lrr resistance protein - 2e-3 At5g04720 ADR1-L2 (ADR1-like 2) C.G. S.X.
0.34 0 670 PtpAffx.138996.1.S1_at CX182529 nbs-lrr resistance protein - 9e-15 At5g04720 ADR1-L2 (ADR1-like 2) C.G. S.X.
0.34 2e-63 244 PtpAffx.69413.1.A1_at CV258035 nbs-lrr resistance protein - 2e+0 At5g18748 unknown protein C.G. S.X.
0.01 5e-2 40 PtpAffx.224870.1.S1_at pmrna43761 cc-nbs-lrr resistance protein - 1e-1 At5g58210 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 5e-2 40 PtpAffx.221841.1.S1_x_at pmrna38924 cc-nbs-lrr resistance protein - 4e-1 At5g58210 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 5e-2 40 PtpAffx.221843.1.S1_at pmrna38926 cc-nbs-lrr resistance protein - 4e-1 At5g55850 NOI C.G. S.X.
0.01 5e-2 40 PtpAffx.221841.1.S1_at pmrna38924 cc-nbs-lrr resistance protein - 4e-1 At5g58210 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 5e-2 40 PtpAffx.221843.1.S1_x_at pmrna38926 cc-nbs-lrr resistance protein - 4e-1 At5g55850 NOI C.G. S.X.
0.01 5e-2 40 PtpAffx.219441.1.S1_x_at pmrna35362 cc-nbs-lrr resistance protein - 1e-1 At5g45210 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-3 44 Arabidopsis thaliana At5g04720 830350 ADR1-L2 (ADR1-like 2) F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFA - - - C.G. S.X.
0.07 2e-4 48 Glycine max GmaAffx.90517.1.S1_at CF806242 - - 8e-2 At5g04720 ADR1-L2 (ADR1-like 2) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig11402_s_at Contig11402 - - 1e+1 At3g02240 unknown protein C.G. S.X.
0.03 8e-2 40 Oryza sativa Os.55294.1.S1_at - - - 0 C.G. S.X.
0.02 6e-1 36 Triticum aestivum TaAffx.86097.1.S1_at CA616768 - - 2e-1 At1g33860 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1617926_at CF205727.1 - - 2e+0 At5g64460 - C.G. S.X.
0.02 4e+0 32 Zea mays Zm.5522.1.A1_at AI622432 hypothetical protein LOC100272415 - 1e+0 At5g23950 C2 domain-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage