CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.478.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.478.1.A1_at CK087253 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor S.X. H.G.
0.71 92.6 Ptp.7764.1.S1_at DN489656 hypothetical protein - 5e+0 At5g49170 unknown protein S.X. H.G.
0.67 91.1 Ptp.789.1.S1_at CK089311 hypothetical protein - 8e-8 At2g41820 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.44 71.9 Ptp.7158.1.S1_at CV246958 - - 8e+0 At5g64310 AGP1 (ARABINOGALACTAN PROTEIN 1) S.X. H.G.
0.36 61.6 PtpAffx.26773.2.A1_at CF232644 hypothetical protein - 1e+0 At4g12840 unknown protein S.X. H.G.
0.35 59.7 Ptp.2544.1.A1_at CK087698 hypothetical protein - 1e-12 At3g24660 TMKL1 (transmembrane kinase-like 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.4 99.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.5 99.2 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.4 98.6 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.4 98.6 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.7 98.3 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.0 98.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.61 0 634 PtpAffx.212114.1.S1_at pmrna23757 hypothetical protein - 3e-15 At1g72160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.43 4e-60 232 PtpAffx.2090.1.A1_at CF236600 - - 4e-1 At4g21450 vesicle-associated membrane family protein / VAMP family protein C.G. S.X.
0.14 6e-47 188 PtpAffx.161201.1.S1_at CN549370 hypothetical protein - 1e-2 At1g72160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.19 2e-37 157 Ptp.5620.1.S1_s_at AI161484 hypothetical protein - 7e-3 At1g72160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.19 2e-37 157 Ptp.5620.1.S1_at AI161484 hypothetical protein - 7e-3 At1g72160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.05 2e-3 44 PtpAffx.47488.1.S1_s_at CF119174 - - 9e-7 At1g72160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.09 1e-1 38 PtpAffx.47475.1.S1_at BU824148 - - 3e-1 At2g30960 unknown protein C.G. S.X.
0.09 1e-1 38 PtpAffx.47475.1.S1_s_at BU824148 - - 3e-1 At2g30960 unknown protein C.G. S.X.
0.01 1e-1 38 PtpAffx.225289.1.S1_at pmrna44531 hypothetical protein - 6e-3 At2g25470 AtRLP21 (Receptor Like Protein 21) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At4g25410 828644 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFM - - - C.G. S.X.
0.16 2e-12 73 Glycine max Gma.2972.2.S1_at BM522991 - - 3e-1 At1g53935 unknown protein C.G. S.X.
0.04 2e-1 36 Hordeum vulgare HVSMEn0019B10f2_s_at HVSMEn0019B10f2 - - 1e-1 At2g30960 unknown protein C.G. S.X.
0.03 5e-2 40 Oryza sativa Os03g0577400 9631.m03649 - - 3e-1 At5g01881 unknown protein C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.12962.1.S1_at BJ208348 - - 1e+1 At5g05657 - C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1620014_at CF210422 hypothetical protein LOC100261066 - 3e-13 At2g43340 unknown protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.429.1.A1_at AI676885 - - 8e-1 At5g20150 SPX1 (SPX DOMAIN GENE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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