Gene omics information

Query gene ID	Ptp.4771.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	Ptp.4771.1.S1_at	BU893475	hypothetical protein	-	1e-10	At4g19670	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.149909.1.S1_s_at	AJ773011	hypothetical protein	-	3e-141	At2g13560	malate oxidoreductase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.215067.1.S1_at	pmrna29028	hypothetical protein	-	3e-5	At2g21120	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.3086.1.S1_s_at	BU832807	hypothetical protein	-	4e-47	At2g13560	malate oxidoreductase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.141519.1.S1_at	AJ774599	hypothetical protein	-	2e-120	At5g64070	PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.84497.1.S1_s_at	CF231611	hypothetical protein	-	9e-17	At3g18140	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	94.7	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3	93.7	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3	93.7	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	722	PtpAffx.27201.1.A1_at	CV239923	hypothetical protein	-	2e-13	At4g19670	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	1e-75	284	PtpAffx.27201.3.S1_at	CV225601	-	-	1e-7	At1g36078	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-2	40	PtpAffx.7021.1.S1_s_at	CK105066	-	-	9e+0	At5g42797	LCR28 (Low-molecular-weight cysteine-rich 28)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.2414.1.S1_s_at	CB239826	aquaporin, MIP family, NIP subfamily	-	2e-57	At4g10380	NIP5	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.2414.1.S2_s_at	CX658567	aquaporin, MIP family, NIP subfamily	-	2e-57	At4g10380	NIP5	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	Ptp.7286.1.S1_at	DN492442	aquaporin, MIP family, NIP subfamily	-	3e-63	At4g10380	NIP5	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.222224.1.S1_at	pmrna39499	hypothetical protein	-	2e+0	At4g31840	plastocyanin-like domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.212171.1.S1_at	pmrna23864	hypothetical protein	-	7e-50	At5g18390	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.19521.2.A1_a_at	CV259711	-	-	1e+0	At1g12938	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-10	67	Arabidopsis thaliana	At4g19670	827711	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	4e-8	59	Glycine max	GmaAffx.86426.1.S1_at	BI321135	-	-	3e-13	At4g19670	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HVSMEf0006D12r2_s_at	HVSMEf0006D12r2	-	-	9e-1	At3g25160	ER lumen protein retaining receptor family protein	C.G.	S.X.	Please select
0.07	8e-1	36	Oryza sativa	Os12g0631200	AK101710.1	-	Zn-finger, cysteine-rich C6HC domain containingprotein	2e-2	At4g19670	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	Ta.10308.3.S1_a_at	CA737264	-	-	3e+0	At1g14360	UTR3 (UDP-GALACTOSE TRANSPORTER 3)	C.G.	S.X.	Please select
0.25	1e-35	149	Vitis vinifera	1617731_at	CB971121	hypothetical protein LOC100263135	-	2e-12	At4g19670	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	7e-1	34	Zea mays	Zm.15776.1.S1_at	BE639950	-	-	6e+0	At5g46025	Ras-related GTP-binding family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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