CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.4724.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.88 97.7 Ptp.4724.1.S1_at CX182386 hypothetical protein - 6e-53 At5g20520 WAV2 (WAVY GROWTH 2) S.X. H.G.
0.24 41.8 PtpAffx.18233.1.S1_a_at BU833548 hypothetical protein - 5e-3 At2g23310 ATRER1C1 S.X. H.G.
0.19 32.7 Ptp.3001.2.A1_s_at BP937097 hypothetical protein - 1e-3 At2g44520 COX10 (cytochrome c oxidase 10) S.X. H.G.
0.16 26.9 PtpAffx.85915.1.S1_at CK319340 hypothetical protein - 8e-8 At1g06470 phosphate translocator-related S.X. H.G.
0.13 21.6 PtpAffx.4058.1.S1_at CX657944 hypothetical protein - 1e-3 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related S.X. H.G.
0.07 11.6 PtpAffx.62134.1.S1_at CX657226 hypothetical protein - 3e-1 At5g14250 COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) S.X. H.G.
0.07 11.6 PtpAffx.141306.1.S1_at BI068367 hypothetical protein - 3e-17 At1g18340 basal transcription factor complex subunit-related S.X. H.G.
0.05 8.3 PtpAffx.132816.1.S1_at AJ893512.1 hypothetical protein - 3e-13 At2g05320 beta-1,2-N-acetylglucosaminyltransferase II S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 97.4 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6 94.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1 88.6 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 0 1433 PtpAffx.74614.1.S1_at CV262651 hypothetical protein - 2e-63 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.53 0 819 PtpAffx.74614.3.S1_at CV270110 - - 2e-64 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.53 0 819 PtpAffx.74614.3.S1_s_at CV270110 hypothetical protein - 2e-64 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.02 3e+0 34 PtpAffx.9825.1.S1_at BU884737 hypothetical protein - 6e-1 At2g15240 UNC-50 family protein C.G. S.X.
0.02 3e+0 34 PtpAffx.94789.1.A1_at CV271535 hypothetical protein - 2e+0 At4g14500 - C.G. S.X.
0.02 3e+0 34 PtpAffx.56623.1.A1_at CV258085 - - 4e-10 At5g64580 AAA-type ATPase family protein C.G. S.X.
0.01 3e+0 34 PtpAffx.2294.1.S1_at CN524740 hypothetical protein - 4e-48 At1g66530 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative C.G. S.X.
0.02 3e+0 34 PtpAffx.224693.1.S1_s_at pmrna43496 hypothetical protein - 5e-4 At5g15180 peroxidase, putative C.G. S.X.
0.02 3e+0 34 PtpAffx.114501.1.A1_at CV256591 hypothetical protein - 4e-1 At1g74630 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 6e-53 208 Arabidopsis thaliana At5g20520 832174 WAV2 (WAVY GROWTH 2) Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch). - - - C.G. S.X.
0.21 9e-59 228 Glycine max Gma.13971.1.S1_at CD412065 - - 8e-22 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.12 3e-10 65 Hordeum vulgare Contig982_at Contig982 - - 2e-1 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.22 4e-3 44 Oryza sativa Os07g0608300 AK073927.1 - Esterase/lipase/thioesterase domain containingprotein 1e-2 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.08 2e-6 54 Triticum aestivum Ta.7422.3.S1_a_at CA593775 - - 6e-5 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1609679_at CF568879 - - 8e-26 At1g60060 unknown protein C.G. S.X.
0.05 1e-3 44 Zea mays Zm.12534.1.A1_at CF628471 hypothetical protein LOC100192944 - 5e-5 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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