Gene omics information

Query gene ID Ptp.4724.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8897.7Ptp.4724.1.S1_atCX182386hypothetical protein-6e-53At5g20520WAV2 (WAVY GROWTH 2)S.X.H.G.
0.2441.8PtpAffx.18233.1.S1_a_atBU833548hypothetical protein-5e-3At2g23310ATRER1C1S.X.H.G.
0.1932.7Ptp.3001.2.A1_s_atBP937097hypothetical protein-1e-3At2g44520COX10 (cytochrome c oxidase 10)S.X.H.G.
0.1626.9PtpAffx.85915.1.S1_atCK319340hypothetical protein-8e-8At1g06470phosphate translocator-relatedS.X.H.G.
0.1321.6PtpAffx.4058.1.S1_atCX657944hypothetical protein-1e-3At5g11980conserved oligomeric Golgi complex component-related / COG complex component-relatedS.X.H.G.
0.0711.6PtpAffx.62134.1.S1_atCX657226hypothetical protein-3e-1At5g14250COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)S.X.H.G.
0.0711.6PtpAffx.141306.1.S1_atBI068367hypothetical protein-3e-17At1g18340basal transcription factor complex subunit-relatedS.X.H.G.
0.058.3PtpAffx.132816.1.S1_atAJ893512.1hypothetical protein-3e-13At2g05320beta-1,2-N-acetylglucosaminyltransferase IIS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.997.4GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
5.597.1GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.694.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
3.293.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
2.791.8GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.188.6GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue series
2.088.0GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
2.088.0GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.5401433PtpAffx.74614.1.S1_atCV262651hypothetical protein-2e-63At5g20520WAV2 (WAVY GROWTH 2)C.G.S.X.
0.530819PtpAffx.74614.3.S1_atCV270110--2e-64At5g20520WAV2 (WAVY GROWTH 2)C.G.S.X.
0.530819PtpAffx.74614.3.S1_s_atCV270110hypothetical protein-2e-64At5g20520WAV2 (WAVY GROWTH 2)C.G.S.X.
0.023e+034PtpAffx.9825.1.S1_atBU884737hypothetical protein-6e-1At2g15240UNC-50 family proteinC.G.S.X.
0.023e+034PtpAffx.94789.1.A1_atCV271535hypothetical protein-2e+0At4g14500-C.G.S.X.
0.023e+034PtpAffx.56623.1.A1_atCV258085--4e-10At5g64580AAA-type ATPase family proteinC.G.S.X.
0.013e+034PtpAffx.2294.1.S1_atCN524740hypothetical protein-4e-48At1g66530arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putativeC.G.S.X.
0.023e+034PtpAffx.224693.1.S1_s_atpmrna43496hypothetical protein-5e-4At5g15180peroxidase, putativeC.G.S.X.
0.023e+034PtpAffx.114501.1.A1_atCV256591hypothetical protein-4e-1At1g74630pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.396e-53208Arabidopsis thalianaAt5g20520832174WAV2 (WAVY GROWTH 2)Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch).---C.G.S.X.
0.219e-59228Glycine maxGma.13971.1.S1_atCD412065--8e-22At5g20520WAV2 (WAVY GROWTH 2)C.G.S.X.
0.123e-1065Hordeum vulgareContig982_atContig982--2e-1At5g20520WAV2 (WAVY GROWTH 2)C.G.S.X.
0.224e-344Oryza sativaOs07g0608300AK073927.1-Esterase/lipase/thioesterase domain containingprotein1e-2At5g20520WAV2 (WAVY GROWTH 2)C.G.S.X.
0.082e-654Triticum aestivumTa.7422.3.S1_a_atCA593775--6e-5At5g20520WAV2 (WAVY GROWTH 2)C.G.S.X.
0.022e+032Vitis vinifera1609679_atCF568879--8e-26At1g60060unknown proteinC.G.S.X.
0.051e-344Zea maysZm.12534.1.A1_atCF628471hypothetical protein LOC100192944-5e-5At5g20520WAV2 (WAVY GROWTH 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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