CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.4653.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.4653.1.S1_at CK116855 - - 2e-21 At4g04880 adenosine/AMP deaminase family protein S.X. H.G.
0.50 78.6 PtpAffx.16547.1.A1_a_at CV257887 hypothetical protein - 4e-100 At2g43750 OASB (O-ACETYLSERINE (THIOL) LYASE B) S.X. H.G.
0.50 78.6 PtpAffx.135096.1.S1_at CV263444 hypothetical protein - 5e-32 At4g02790 GTP-binding family protein S.X. H.G.
0.38 63.7 PtpAffx.68644.1.S1_at CX180837 hypothetical protein - 4e-10 At4g17300 NS1 S.X. H.G.
0.36 61.6 PtpAffx.135096.2.S1_a_at BI122655 hypothetical protein - 8e-17 At4g02790 GTP-binding family protein S.X. H.G.
0.22 38.3 PtpAffx.121212.1.A1_at CV249010 - - 3e-5 At1g30570 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.1 98.7 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.6 96.2 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4 94.0 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2 93.5 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0 92.9 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-1 36 PtpAffx.217337.1.S1_at pmrna32555 hypothetical protein - 4e-1 At1g34380 5'-3' exonuclease family protein C.G. S.X.
0.02 6e-1 36 PtpAffx.209318.1.S1_at pmrna18412 hypothetical protein - 5e-35 At2g39830 DAR2 (DA1-RELATED PROTEIN 2) C.G. S.X.
0.02 2e+0 34 PtpAffx.7997.1.S1_at BU868664 hypothetical protein - 2e-10 At2g46830 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) C.G. S.X.
0.01 2e+0 34 PtpAffx.692.2.S1_x_at CV283408 - - 1e-7 At1g19397 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.692.2.S2_at CV274106 hypothetical protein - 1e-7 At1g19397 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.68897.1.A1_at CV280195 - - 1e+0 At4g31700 RPS6 (RIBOSOMAL PROTEIN S6) C.G. S.X.
0.02 2e+0 34 PtpAffx.450.3.S1_at CV274560 hypothetical protein - 1e-6 At4g27280 calcium-binding EF hand family protein C.G. S.X.
0.04 2e+0 34 PtpAffx.220995.1.S1_x_at pmrna37517 hypothetical protein - 3e-4 At3g45850 kinesin motor protein-related C.G. S.X.
0.03 2e+0 34 PtpAffx.218505.1.S1_x_at pmrna34153 hypothetical protein - 1e-6 At1g05680 UDP-glucoronosyl/UDP-glucosyl transferase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 2e-21 103 Arabidopsis thaliana At4g04880 825826 adenosine/AMP deaminase family protein F:deaminase activity;P:purine ribonucleoside monophosphate biosynthetic process;C:cellular_component unknown;BOMFPA - - - C.G. S.X.
0.42 2e-25 117 Glycine max GmaAffx.39529.1.S1_at AW395127 - - 1e-14 At4g04880 adenosine/AMP deaminase family protein C.G. S.X.
0.03 8e-1 34 Hordeum vulgare HI05P01u_at HI05P01u - - 4e+0 At2g19300 unknown protein C.G. S.X.
0.03 2e-4 48 Oryza sativa Os07g0661000 AK072514.1 - Adenosine/AMP deaminase family protein 2e-1 At1g16210 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.111471.1.S1_at CA639802 - - 4e+0 At1g17090 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1621867_at CF516530 - - 5e-2 At5g66000 unknown protein C.G. S.X.
0.03 7e-1 34 Zea mays ZmAffx.210.1.A1_at AI670218 - - 8e-1 At5g52200 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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