Gene omics information

Query gene ID	Ptp.4562.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	Ptp.4562.1.S1_s_at	CV261348	hypothetical protein	-	1e-20	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.93043.1.S1_at	CX178086	hypothetical protein	-	4e-4	At1g29800	phosphoinositide binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.72383.1.S1_at	BU888356	-	-	2e+0	At4g24265	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.95687.1.A1_at	DN496546	hypothetical protein	-	4e-4	At2g25010	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.163113.1.S1_s_at	CX182719	hypothetical protein	-	2e-4	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.7	91.8	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.79	0	2002	PtpAffx.211979.1.S1_at	pmrna23526	hypothetical protein	-	2e-17	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.60	0	1332	Ptp.3683.1.A1_at	CV269372	hypothetical protein	-	3e-18	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	3e-40	167	Ptp.3683.2.S1_s_at	DN501534	hypothetical protein	-	4e+0	At1g10200	WLIM1	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	3e-40	167	Ptp.3683.2.S1_at	DN501534	hypothetical protein	-	4e+0	At1g10200	WLIM1	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-4	48	PtpAffx.219978.1.S1_at	pmrna36182	hypothetical protein	-	6e-7	At4g31810	enoyl-CoA hydratase/isomerase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-2	42	PtpAffx.224696.1.S1_s_at	pmrna43502	-	-	6e-5	At4g27290	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-2	42	PtpAffx.224696.1.S1_at	pmrna43502	-	-	6e-5	At4g27290	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-2	42	PtpAffx.127478.1.A1_at	CV256390	-	-	3e-8	At4g21390	B120	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	5e-2	40	PtpAffx.225278.1.S1_at	pmrna44508	hypothetical protein	-	9e-3	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-20	101	Arabidopsis thaliana	At5g65940	836724	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	hydrolyzes beta-hydroxyisobutyryl-CoA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	2e-35	151	Glycine max	Gma.7192.1.S1_at	BU765896	Peroxisomal 3-hydroxyisobutyryl-coenzyme A hydrolase	-	7e-26	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please select
0.02	3e-1	36	Hordeum vulgare	HV12A05u_s_at	HV12A05u	ferritin 1	-	2e-2	At5g01600	ATFER1	C.G.	S.X.	Please select
0.12	2e-5	52	Oryza sativa	Os10g0572800	NM_197847.1	-	Enoyl-CoA hydratase/isomerase domain containingprotein	5e-4	At2g30660	3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	3e-21	103	Triticum aestivum	Ta.6750.3.S1_at	CA649267	-	-	1e-23	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please select
0.11	8e-13	73	Vitis vinifera	1619015_at	CD715247	-	-	2e-8	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please select
0.17	3e-19	95	Zea mays	Zm.9486.1.A1_at	CK347877	CHY1	-	1e-18	At2g30660	3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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