CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.4515.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.4515.1.S1_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) S.X. H.G.
0.73 93.6 PtpAffx.5423.1.S1_s_at CV229504 hypothetical protein - 3e-24 At4g11820 MVA1 S.X. H.G.
0.55 82.2 PtpAffx.147936.1.S1_s_at BP924717 hypothetical protein - 1e-21 At5g48230 ACAT2 (ACETOACETYL-COA THIOLASE 2) S.X. H.G.
0.50 78.6 Ptp.4515.1.S1_s_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) S.X. H.G.
0.35 59.7 PtpAffx.208122.1.S1_at pmrna16132 hypothetical protein - 2e+0 At1g22510 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.25 43.6 Ptp.6668.1.S1_at CN523821 hypothetical protein - 4e-38 At5g48230 ACAT2 (ACETOACETYL-COA THIOLASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.8 99.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.4 98.6 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.2 97.6 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2 93.5 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 2597 Ptp.4515.1.S1_s_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.01 3e-1 38 PtpAffx.225522.1.S1_at pmrna44928 cc-nbs-lrr resistance protein - 4e-1 At1g68760 ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1) C.G. S.X.
0.01 3e-1 38 PtpAffx.219444.1.S1_at pmrna35365 cc-nbs-lrr resistance protein - 2e+0 At5g40370 glutaredoxin, putative C.G. S.X.
0.01 3e-1 38 PtpAffx.219444.1.S1_x_at pmrna35365 cc-nbs-lrr resistance protein - 2e+0 At5g40370 glutaredoxin, putative C.G. S.X.
0.01 3e-1 38 PtpAffx.217806.1.S1_s_at pmrna33214 cc-nbs-lrr resistance protein /// hypothetical protein /// nbs-lrr resistance protein - 1e+0 At5g40370 glutaredoxin, putative C.G. S.X.
0.02 3e-1 38 PtpAffx.217800.1.S1_x_at pmrna33206 cc-nbs-lrr resistance protein - 3e-1 At1g29990 PDF6 (PREFOLDIN 6) C.G. S.X.
0.02 3e-1 38 PtpAffx.214947.1.S1_x_at pmrna28877 hypothetical protein - 2e+0 At5g03210 unknown protein C.G. S.X.
0.01 3e-1 38 PtpAffx.211682.1.S1_at pmrna22899 hypothetical protein - 3e+0 At2g38600 acid phosphatase class B family protein C.G. S.X.
0.01 1e+0 36 PtpAffx.224870.1.S1_at pmrna43761 cc-nbs-lrr resistance protein - 1e-1 At5g58210 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 5e-79 295 Arabidopsis thaliana At5g47770 834828 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) Encodes a protein with farnesyl diphosphate synthase activity. - - - C.G. S.X.
0.48 8e-85 315 Glycine max Gma.1844.1.S1_at CD396215 - - 2e-26 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
0.27 6e-37 155 Hordeum vulgare Contig7831_at Contig7831 - - 6e-23 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
0.24 9e-27 123 Oryza sativa Os01g0703400 D85317.1 - Farnesyl pyrophosphate synthetase (FPP synthetase)(FPS) (Farnesyl diphosphate synthetase) [Includes:Dimethylallyltranstransferase (EC 2.5.1.1) 1e-24 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.22 3e-37 157 Triticum aestivum Ta.341.1.S1_at BT009271.1 - - 1e-20 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
0.45 3e-87 321 Vitis vinifera 1621231_at BQ794787 farnesyl diphosphate synthase - 2e-72 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.17 1e-16 87 Zea mays Zm.317.1.S1_at AF330036.1 geranylgeranyl-diphosphate synthase - 3e-12 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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