Gene omics information

Query gene ID	Ptp.4499.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	Ptp.4499.1.S1_at	CN519933	hypothetical protein	-	3e-8	At5g55640	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	Ptp.1502.1.S1_a_at	CV234701	hypothetical protein	-	2e-11	At1g51200	zinc finger (AN1-like) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.21710.1.S1_s_at	CV230014	hypothetical protein	-	8e-120	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.4277.1.S1_a_at	CV265521	-	-	1e-131	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.249.859.A1_at	CV276451	-	-	4e-43	At5g03240	UBQ3 (POLYUBIQUITIN 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.249.18.A1_x_at	BP931138	-	-	3e-77	At4g02890	UBQ14	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.2152.1.S1_s_at	CV254452	hypothetical protein	-	5e-5	At3g13410	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.21710.1.S1_x_at	CV230014	hypothetical protein	-	8e-120	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.5471.1.A1_a_at	CV252337	hypothetical protein	-	3e-15	At3g09640	APX2 (ASCORBATE PEROXIDASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.4306.1.S1_at	CV225469	hypothetical protein	-	5e-78	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	94.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	PtpAffx.75274.1.A1_at	CV269209	hypothetical protein	-	2e+0	At5g45350	proline-rich family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.730.2.S1_at	CV277434	-	-	4e-17	At1g80920	J8	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.4077.1.S1_at	CX655700	hypothetical protein	-	3e-3	At4g33565	protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.216782.1.S1_at	pmrna31779	hypothetical protein	-	2e-19	At5g06900	CYP93D1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.213240.1.S1_at	pmrna25891	hypothetical protein	-	4e-1	At5g05130	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.213233.1.S1_at	pmrna25882	chromatin remodeling complex subunit	-	3e-1	At5g05130	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.213236.1.S1_s_at	pmrna25887	chromatin remodeling complex subunit	-	3e-1	At5g05130	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.213240.1.S1_s_at	pmrna25891	chromatin remodeling complex subunit /// hypothetical protein	-	4e-1	At5g05130	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.213233.1.S1_x_at	pmrna25882	chromatin remodeling complex subunit	-	3e-1	At5g05130	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-8	59	Arabidopsis thaliana	At5g55640	835658	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	3e-15	83	Glycine max	GmaAffx.30833.1.S1_at	AW509222	-	-	1e-5	At5g55640	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig14979_s_at	Contig14979	-	-	2e-2	At4g30460	glycine-rich protein	C.G.	S.X.	Please select
0.06	3e-3	44	Oryza sativa	Os03g0595200	NM_184956.1	-	Conserved hypothetical protein	3e-1	At3g51750	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	TaAffx.31197.1.S1_at	CA626106	-	-	3e+0	At3g17860	JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)	C.G.	S.X.	Please select
0.25	6e-22	103	Vitis vinifera	1621111_at	BQ798687	hypothetical protein LOC100254821	-	2e+0	At4g33145	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.10265.1.A1_at	BM660318	hypothetical protein LOC100279289	-	2e-4	At3g02090	mitochondrial processing peptidase beta subunit, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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