Gene omics information

Query gene ID Ptp.4472.1.S1_s_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5582.2Ptp.4472.1.S1_s_atDN494369--3e-6At4g33740unknown proteinS.X.H.G.
0.3661.6PtpAffx.15790.1.S1_atBU894484SET domain protein-2e+0At2g45960PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B)S.X.H.G.
0.3357.5PtpAffx.83523.1.S1_atDN496561hypothetical protein-1e-13At5g05970NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1)S.X.H.G.
0.2543.6PtpAffx.121503.1.A1_s_atCV237648hypothetical protein-8e-30At1g26370RNA helicase, putativeS.X.H.G.
0.2340.5PtpAffx.50006.1.A1_atCX175175hypothetical protein /// f-box family protein-3e-2At1g55270kelch repeat-containing F-box family proteinS.X.H.G.
0.2034.6PtpAffx.115220.1.S1_s_atCX175982hypothetical protein-2e-2At1g78520-S.X.H.G.
0.0812.9Ptp.7945.1.S1_atCV231943hypothetical protein-6e+0At5g47060senescence-associated protein-relatedS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.494.0GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.393.7GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
2.590.9GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.490.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.389.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
2.389.8GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.188.6GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
2.188.6GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.550773PtpAffx.204754.1.S1_atpmrna9357--9e-6At4g33740unknown proteinC.G.S.X.
0.366e-58224PtpAffx.201208.1.S1_atpmrna2400hypothetical protein-7e-3At4g33740unknown proteinC.G.S.X.
0.035e-342PtpAffx.202259.1.S1_atpmrna4529hypothetical protein-1e-1At4g13540unknown proteinC.G.S.X.
0.027e-238PtpAffx.40682.1.S1_a_atCV256408hypothetical protein-2e-10At5g53070ribosomal protein L9 family proteinC.G.S.X.
0.037e-238PtpAffx.37831.1.A1_atCV237214--4e-1At3g44750HDA3 (HISTONE DEACETYLASE 3)C.G.S.X.
0.037e-238PtpAffx.24133.1.S1_s_atCA821475hypothetical protein-2e+0At1g22230unknown proteinC.G.S.X.
0.027e-238PtpAffx.201918.1.S1_x_atpmrna3819hypothetical protein-1e-5At1g78110unknown proteinC.G.S.X.
0.027e-238PtpAffx.201918.1.S1_atpmrna3819hypothetical protein-1e-5At1g78110unknown proteinC.G.S.X.
0.037e-238Ptp.744.1.A1_atCV257858hypothetical protein-2e-34At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.123e-652Arabidopsis thalianaAt4g33740829516unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA---C.G.S.X.
0.162e-1169Glycine maxGmaAffx.60096.1.S1_atBM519537--2e-1At4g33740unknown proteinC.G.S.X.
0.044e-134Hordeum vulgareContig8457_atContig8457--2e-5At2g22080unknown proteinC.G.S.X.
0.071e-138Oryza sativaOs09g04519009637.m02457-Hypothetical protein6e+0At3g62907unknown proteinC.G.S.X.
0.042e-136Triticum aestivumTaAffx.6564.1.S1_atCA683008--2e-2At3g24506unknown proteinC.G.S.X.
0.042e-134Vitis vinifera1621823_atCF214240hypothetical protein LOC100253216-4e+0At5g66000unknown proteinC.G.S.X.
0.054e-134Zea maysZmAffx.311.1.A1_atAI670448--2e-1At3g48208-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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