Gene omics information

Query gene ID	Ptp.4446.1.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	84.2	Ptp.4446.1.A1_s_at	CV257969	hypothetical protein	-	2e-118	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	Ptp.2290.1.S1_x_at	CV278722	hypothetical protein	-	6e-28	At1g09590	60S ribosomal protein L21 (RPL21A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.4240.2.A1_a_at	CA927596	hypothetical protein	-	2e-27	At3g18880	ribosomal protein S17 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	Ptp.3068.1.S1_at	CV265985	hypothetical protein	-	6e-7	At3g09890	ankyrin repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.2156.1.S1_s_at	CV237670	-	-	8e-21	At4g09320	NDPK1	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.115389.1.S1_s_at	AJ779828	hypothetical protein	-	2e-45	At1g26550	peptidyl-prolyl cis-trans isomerase PPIC-type family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.1851.1.S1_x_at	CV250325	hypothetical protein	-	8e-58	At1g70600	structural constituent of ribosome	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	95.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	0	1681	PtpAffx.206790.1.S1_at	pmrna13475	hypothetical protein	-	0	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.60	0	1229	Ptp.4446.2.A1_s_at	CV232502	hypothetical protein	-	2e-167	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	7e-168	591	PtpAffx.118484.1.S1_s_at	CK099983	hypothetical protein	-	1e-43	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.37	6e-119	428	Ptp.2038.1.S1_at	CK088606	hypothetical protein	-	4e-34	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	2e-8	61	PtpAffx.140498.1.A1_at	CV255954	hypothetical protein	-	3e+0	At5g47410	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.211257.1.S1_at	pmrna22092	hypothetical protein	-	2e+0	At3g21352	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.203809.1.S1_at	pmrna7529	hypothetical protein	-	7e-44	At1g29800	phosphoinositide binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.62528.1.S1_at	CV276083	hypothetical protein	-	2e+0	At1g75920	family II extracellular lipase 5 (EXL5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.209501.1.S1_at	pmrna18827	hypothetical protein	-	7e+0	At5g41400	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	2e-118	426	Arabidopsis thaliana	At5g11170	830986	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:response to cadmium ion;C:nucleolus;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	4e-126	452	Glycine max	Gma.2609.1.S1_s_at	CD408095	-	-	4e-73	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please select
0.29	4e-53	208	Hordeum vulgare	Contig6424_at	Contig6424	-	-	6e-116	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please select
0.33	5e-46	186	Oryza sativa	Os01g0549700	AK067431.1	-	RNA helicase (Fragment)	1e-111	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	8e-59	228	Triticum aestivum	Ta.26612.1.A1_at	CD491356	-	-	1e-59	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please select
0.41	1e-128	458	Vitis vinifera	1615376_at	BQ798894	hypothetical protein LOC100268003	-	1e-168	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please select
0.30	1e-31	137	Zea mays	Zm.3715.1.A1_at	AY107107.1	-	-	9e-56	At5g11200	DEAD/DEAH box helicase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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