CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.438.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 Ptp.438.1.S1_at CK317792 hypothetical protein - 2e-18 At5g40550 unknown protein S.X. H.G.
0.91 99.2 PtpAffx.37010.1.A1_a_at CV231839 hypothetical protein - 4e-16 At1g72710 CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) S.X. H.G.
0.33 57.5 PtpAffx.65137.1.S1_at DN493780 - - 5e-3 At3g15920 phox (PX) domain-containing protein S.X. H.G.
0.31 53.7 Ptp.2201.1.S1_at DN492023 hypothetical protein - 8e-6 At3g14160 oxidoreductase S.X. H.G.
0.26 45.2 PtpAffx.13738.2.S1_a_at CV278160 - - 6e-13 At5g66930 unknown protein S.X. H.G.
0.18 30.8 Ptp.4836.1.S1_at CV264041 hypothetical protein - 1e-19 At1g12470 Pep3/Vps18/deep orange family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 95.3 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8 92.1 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 8e-46 184 PtpAffx.91178.1.S1_at CA823355 hypothetical protein - 1e-27 At3g27460 unknown protein C.G. S.X.
0.02 1e-1 38 PtpAffx.200889.1.S1_at pmrna1745 hypothetical protein - 3e-9 At5g13530 KEG (KEEP ON GOING) C.G. S.X.
0.03 4e-1 36 PtpAffx.208118.1.S1_at pmrna16123 hypothetical protein - 3e-10 At3g18420 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.03 4e-1 36 PtpAffx.208118.1.S1_x_at pmrna16123 hypothetical protein - 3e-10 At3g18420 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.01 4e-1 36 PtpAffx.205941.1.S1_at pmrna11790 autoinhibited H+ ATPase - 2e-98 At3g42640 AHA8 (Arabidopsis H(+)-ATPase 8) C.G. S.X.
0.02 2e+0 34 PtpAffx.31506.1.S1_at BU818105 hypothetical protein - 9e-3 At3g62040 catalytic/ hydrolase C.G. S.X.
0.01 2e+0 34 PtpAffx.224697.1.S1_at pmrna43504 hypothetical protein - 4e-12 At4g21410 protein kinase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.205747.1.S1_at pmrna11344 hypothetical protein - 3e-9 At4g03030 kelch repeat-containing F-box family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.204229.1.S1_at pmrna8317 hypothetical protein - 3e-46 At2g21590 APL4 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 2e-18 93 Arabidopsis thaliana At5g40550 834053 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO - - - C.G. S.X.
0.42 3e-45 182 Glycine max GmaAffx.5182.2.S1_at AW186428 - - 4e-15 At3g27460 unknown protein C.G. S.X.
0.11 2e-16 85 Hordeum vulgare Contig6718_s_at Contig6718 - - 1e-8 At5g40550 unknown protein C.G. S.X.
0.11 5e-14 79 Oryza sativa OsAffx.31809.1.S1_at - - - 0 C.G. S.X.
0.06 1e-6 54 Triticum aestivum Ta.9706.1.S1_a_at BQ169555 - - 3e-3 At5g40550 unknown protein C.G. S.X.
0.32 1e-28 125 Vitis vinifera 1614120_at CB349861 - - 4e-3 At5g40550 unknown protein C.G. S.X.
0.11 2e-6 52 Zea mays Zm.18071.1.S1_at CK849985 hypothetical protein LOC100273149 - 5e-5 At5g40550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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