Gene omics information

Query gene ID	Ptp.4360.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	Ptp.4360.1.S1_s_at	BU831376	hypothetical protein	-	4e-60	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.6774.1.A1_s_at	CV266335	-	-	4e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.2395.1.S1_at	CK092689	hypothetical protein	-	4e-18	At1g49820	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.12016.2.S1_at	CX174164	hypothetical protein	-	1e-19	At1g24360	3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.144428.1.S1_s_at	BU834002	hypothetical protein	-	2e-115	At5g35360	CAC2	S.X.	H.G.	Please selecteFP Browser (expression)
0.08	12.9	Ptp.5902.1.S1_s_at	AI162290	hypothetical protein	-	5e+0	At3g48180	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	97.6	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.7	97.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	743	Ptp.2633.1.S1_at	CK095904	hypothetical protein	-	2e-75	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	8e-133	474	Ptp.6774.1.A1_s_at	CV266335	-	-	4e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	6e-4	46	PtpAffx.206726.1.S1_at	pmrna13352	-	-	1e-4	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	6e-4	46	PtpAffx.10990.1.S1_at	CV271402	hypothetical protein	-	6e-82	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	9e-3	42	PtpAffx.10990.2.S1_a_at	BI068838	hypothetical protein	-	7e-40	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	9e-3	42	PtpAffx.10990.2.S1_at	BI068838	hypothetical protein	-	7e-40	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	9e-3	42	Ptp.1178.1.A1_at	CV265898	hypothetical protein	-	2e-71	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	Ptp.2592.3.S1_x_at	CV281081	thioredoxin h	-	9e-9	At1g19730	ATTRX4	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	Ptp.2592.2.S1_x_at	CX185841	thioredoxin h	-	8e-6	At1g45145	ATTRX5	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	4e-60	232	Arabidopsis thaliana	At1g11840	837731	ATGLX1 (GLYOXALASE I HOMOLOG)	Encodes a glyoxalase I homolog ATGLX1.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	4e-36	153	Glycine max	Gma.4424.1.S1_at	BG237912	-	-	2e-40	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.38	1e-24	113	Hordeum vulgare	Contig1934_at	Contig1934	-	-	7e-13	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.36	3e-31	137	Oryza sativa	Os08g0191700	AK066092.1	-	Glyoxalase I family protein	2e-13	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	1e-19	97	Triticum aestivum	Ta.15606.1.S1_at	CD491155	-	-	4e-10	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.51	3e-85	313	Vitis vinifera	1609781_s_at	CB341681	hypothetical protein LOC100257313	-	1e-66	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.24	7e-32	137	Zea mays	Zm.5962.1.S1_a_at	AY241545.1	glyoxalase I	-	1e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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