Gene omics information

Query gene ID Ptp.4080.1.A1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8096.0Ptp.4080.1.A1_s_atCV239227hypothetical protein-9e-9At5g60340maoC-like dehydratase domain-containing proteinS.X.H.G.
0.6187.0Ptp.4262.1.S1_atCV230272hypothetical protein-1e-42At3g02320RNA binding / tRNA (guanine-N2-)-methyltransferaseS.X.H.G.
0.5784.2Ptp.2066.1.S1_s_atCK088764histone deacetylase complex protein-7e-15At2g45640SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)S.X.H.G.
0.3357.5Ptp.6459.1.S1_atCV263208--5e-13At2g42210mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinS.X.H.G.
0.3357.5PtpAffx.2360.2.A1_atCV253361hypothetical protein-2e-21At4g39280phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putativeS.X.H.G.
0.3255.2PtpAffx.207450.1.S1_s_atpmrna14790hypothetical protein-2e-62At1g14610TWN2 (TWIN 2)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.196.8GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
3.694.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
3.494.0GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
3.393.7GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.393.7GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
2.791.8GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.590.9GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.490.4GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.389.8GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue series
2.389.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.671e-134480PtpAffx.82437.2.A1_atCV245956hypothetical protein-3e-8At5g60340maoC-like dehydratase domain-containing proteinC.G.S.X.
0.024e-240PtpAffx.76893.1.A1_atCV245861hypothetical protein-9e-2At5g13200GRAM domain-containing protein / ABA-responsive protein-relatedC.G.S.X.
0.024e-240PtpAffx.45649.1.S1_atCK090925hypothetical protein-3e-1At2g22475GEM (GL2-EXPRESSION MODULATOR)C.G.S.X.
0.024e-240PtpAffx.224314.1.S1_atpmrna42754hypothetical protein-4e-4At5g13200GRAM domain-containing protein / ABA-responsive protein-relatedC.G.S.X.
0.017e-136PtpAffx.200643.1.S1_atpmrna1250hypothetical protein-8e-4At1g34050ankyrin repeat family proteinC.G.S.X.
0.013e+034PtpAffx.218923.1.S1_atpmrna34681hypothetical protein-4e-2At2g45880BAM7 (BETA-AMYLASE 7)C.G.S.X.
0.013e+034PtpAffx.202635.1.S1_atpmrna5270hypothetical protein-1e-56At3g26720glycosyl hydrolase family 38 proteinC.G.S.X.
0.013e+034PtpAffx.202635.1.S1_s_atpmrna5270hypothetical protein-1e-56At3g26720glycosyl hydrolase family 38 proteinC.G.S.X.
0.023e+034PtpAffx.201551.1.S1_atpmrna3051cytochrome P450-2e+0At5g15750RNA-binding S4 domain-containing proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.119e-961Arabidopsis thalianaAt5g60340836156maoC-like dehydratase domain-containing proteinF:oxidoreductase activity, ATP binding;P:metabolic process;C:mitochondrion;BOMFAP---C.G.S.X.
0.241e-33145Glycine maxGma.13268.1.S1_atCD392209--2e-18At5g60340maoC-like dehydratase domain-containing proteinC.G.S.X.
0.044e-652Hordeum vulgareContig15407_atContig15407--2e+0At5g34829unknown proteinC.G.S.X.
0.107e-550Oryza sativaOs.32983.2.A1_x_at---0C.G.S.X.
0.042e-344Triticum aestivumTaAffx.23310.1.S1_atCK216360--2e+0At2g15970COR413-PM1C.G.S.X.
0.031e-136Vitis vinifera1622299_s_atCK136935.1hypothetical protein LOC100255647-7e-10At5g54190PORAC.G.S.X.
0.093e-342Zea maysZm.4242.1.S1_atCD990106--9e-2At3g57240BG3 (BETA-1,3-GLUCANASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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