Gene omics information

Query gene ID	Ptp.4040.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	Ptp.4040.1.S1_s_at	BU861549	hypothetical protein	-	2e+0	At4g21000	ACA6 (ALPHA CARBONIC ANHYDRASE 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.5188.1.S1_at	AY789051.1	hypothetical protein	-	6e-35	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.211273.1.S1_at	pmrna22115	hypothetical protein	-	2e-77	At2g40690	GLY1	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.5188.1.S1_a_at	AY789051.1	hypothetical protein	-	6e-35	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.209390.1.S1_at	pmrna18598	hypothetical protein	-	9e-5	At3g52270	ATP binding / RNA polymerase II transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.17383.2.A1_s_at	CV283276	hypothetical protein	-	8e-12	At2g45740	PEX11D	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.2093.1.S1_at	CV277161	hypothetical protein	-	2e-34	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.6	97.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	8e-96	349	PtpAffx.5188.1.S1_at	AY789051.1	hypothetical protein	-	6e-35	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.33	8e-96	349	PtpAffx.5188.1.S1_a_at	AY789051.1	hypothetical protein	-	6e-35	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	3e-9	61	PtpAffx.5188.2.S1_a_at	CV278830	hypothetical protein	-	1e-38	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-1	36	PtpAffx.218388.1.S1_at	pmrna33983	hypothetical protein	-	2e+0	At1g53610	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-1	36	PtpAffx.218388.1.S1_s_at	pmrna33983	hypothetical protein	-	2e+0	At1g53610	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-1	34	PtpAffx.215233.1.S1_at	pmrna29300	hypothetical protein	-	4e+0	At5g60800	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-1	34	PtpAffx.215233.1.S1_x_at	pmrna29300	hypothetical protein	-	4e+0	At5g60800	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e+0	32	PtpAffx.223365.1.S1_at	pmrna41325	hypothetical protein	-	5e-10	At3g56250	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	32	PtpAffx.217038.1.S1_at	pmrna32155	multidrug/pheromone exporter, MDR family, ABC transporter family	-	6e-1	At4g01820	PGP3 (P-GLYCOPROTEIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Arabidopsis thaliana	At4g21000	827847	ACA6 (ALPHA CARBONIC ANHYDRASE 6)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e+0	32	Glycine max	GmaAffx.78938.1.A1_at	BU550637	-	-	7e-1	At5g22360	ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)	C.G.	S.X.	Please select
0.07	3e+0	30	Hordeum vulgare	EBed02_SQ002_N06_at	EBed02_SQ002_N06	-	-	1e+0	At2g41870	remorin family protein	C.G.	S.X.	Please select
0.03	1e+1	30	Oryza sativa	OsAffx.29452.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	7e+0	30	Triticum aestivum	Ta.29572.1.S1_at	CA743548	-	-	1e+0	At5g13250	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	28	Vitis vinifera	1621799_at	CF405317	-	-	2e-1	At4g16350	CBL6 (CALCINEURIN B-LIKE PROTEIN 6)	C.G.	S.X.	Please select
0.11	3e+0	30	Zea mays	Zm.6166.3.S1_at	AI668497	Hypothetical protein LOC100193965	-	2e-6	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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