Gene omics information

Query gene ID	Ptp.4024.2.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	Ptp.4024.2.A1_at	CV275984	hypothetical protein	-	2e-75	At3g22890	APS1 (ATP SULFURYLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.2376.1.S1_at	CV241004	hypothetical protein	-	6e-11	At1g01300	aspartyl protease family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.210362.1.S1_s_at	pmrna20368	hypothetical protein	-	4e-1	At4g27585	band 7 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.80539.1.A1_at	BP936249	hypothetical protein	-	2e-3	At1g20900	ESC (ESCAROLA)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.121254.1.A1_at	CV249707	hypothetical protein	-	6e-21	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.205458.1.S1_at	pmrna10789	hypothetical protein	-	1e-5	At1g33080	MATE efflux family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.2	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
10.1	99.0	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
9.0	98.7	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
8.8	98.7	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
7.1	98.1	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
6.6	97.9	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	1295	Ptp.4024.1.S1_a_at	CK104504	hypothetical protein	-	2e-93	At4g14680	APS3	C.G.	S.X.	Please selecteFP Browser (expression)
0.66	0	1295	Ptp.4024.1.S1_at	CK104504	hypothetical protein	-	2e-93	At4g14680	APS3	C.G.	S.X.	Please selecteFP Browser (expression)
0.53	0	1221	PtpAffx.43573.1.A1_s_at	CV260123	hypothetical protein	-	7e-52	At4g14680	APS3	C.G.	S.X.	Please selecteFP Browser (expression)
0.55	0	1205	PtpAffx.43573.2.A1_at	CV270806	hypothetical protein	-	5e-84	At4g14680	APS3	C.G.	S.X.	Please selecteFP Browser (expression)
0.53	0	1148	PtpAffx.163979.1.S1_s_at	CV131326	hypothetical protein	-	8e-12	At5g43780	APS4	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	7e-33	143	PtpAffx.155571.1.A1_at	CK090596	-	-	8e+0	At5g03930	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	1e-28	129	Ptp.4024.3.S1_at	CK094538	-	-	2e-7	At4g14680	APS3	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	2e-24	115	PtpAffx.41647.1.S1_a_at	CK094323	hypothetical protein	-	3e-107	At1g19920	APS2	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	2e-24	115	PtpAffx.41647.1.S1_x_at	CK094323	hypothetical protein	-	3e-107	At1g19920	APS2	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	2e-75	284	Arabidopsis thaliana	At3g22890	821861	APS1 (ATP SULFURYLASE 1)	encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	3e-146	519	Glycine max	Gma.2313.1.S1_at	AF452454.1	ATP sulfurylase	-	1e-83	At3g22890	APS1 (ATP SULFURYLASE 1)	C.G.	S.X.	Please select
0.32	1e-69	264	Hordeum vulgare	Contig2776_at	Contig2776	-	-	5e-20	At3g22890	APS1 (ATP SULFURYLASE 1)	C.G.	S.X.	Please select
0.35	2e-77	291	Oryza sativa	Os03g0743900	AK099593.1	-	ATP sulfurylase (EC 2.7.7.4)	1e-24	At3g22890	APS1 (ATP SULFURYLASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	1e-64	248	Triticum aestivum	Ta.9352.1.S1_at	CD870241	-	-	2e-14	At3g22890	APS1 (ATP SULFURYLASE 1)	C.G.	S.X.	Please select
0.04	4e-3	42	Vitis vinifera	1607986_at	CF606959	hypothetical protein LOC100252345	-	2e-49	At1g19920	APS2	C.G.	S.X.	Please select
0.33	3e-54	212	Zea mays	Zm.5050.1.S1_at	AF016305.1	ATP sulfurylase	-	1e-21	At3g22890	APS1 (ATP SULFURYLASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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