Gene omics information

Query gene ID	Ptp.3781.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	Ptp.3781.1.S1_at	DN498839	hypothetical protein	-	2e-10	At3g49940	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.7437.1.S1_at	BU883908	hypothetical protein	-	7e+0	At5g35375	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.1436.1.S1_x_at	AF349443.1	hypothetical protein	-	2e+0	At3g10585	myb family transcription factor / I-box binding factor-related protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	Ptp.6941.1.S1_at	CF233332	hypothetical protein	-	1e-5	At1g27290	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	Ptp.1436.1.S1_at	AF349443.1	hypothetical protein	-	2e+0	At3g10585	myb family transcription factor / I-box binding factor-related protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.4070.3.S1_at	CX655364	hypothetical protein	-	3e-3	At3g54400	aspartyl protease family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.2	99.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
14.0	99.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.9	98.0	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.8	98.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.6	97.2	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	3e-161	569	PtpAffx.32419.1.A1_at	CV281067	hypothetical protein	-	4e-2	At4g37540	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	C.G.	S.X.	Please selecteFP Browser (expression)
0.36	3e-121	436	PtpAffx.32419.2.S1_s_at	BP925545	hypothetical protein	-	2e-13	At4g37540	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	C.G.	S.X.	Please selecteFP Browser (expression)
0.36	3e-121	436	PtpAffx.32419.2.S1_at	BP925545	hypothetical protein	-	2e-13	At4g37540	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	1e-70	268	PtpAffx.141101.1.A1_at	CV232108	-	-	5e-1	At3g53232	RTFL1 (ROTUNDIFOLIA LIKE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-7	57	PtpAffx.215454.1.S1_s_at	pmrna29658	hypothetical protein	-	2e-46	At1g67100	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-7	57	PtpAffx.215454.1.S1_at	pmrna29658	hypothetical protein	-	2e-46	At1g67100	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-7	57	PtpAffx.203919.1.S1_at	pmrna7735	hypothetical protein	-	3e-32	At1g67100	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	4e-6	54	PtpAffx.201182.1.S1_at	pmrna2342	hypothetical protein	-	1e-6	At4g37540	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	4e-6	54	PtpAffx.201182.1.S1_s_at	pmrna2342	hypothetical protein	-	1e-6	At4g37540	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	2e-10	67	Arabidopsis thaliana	At3g49940	824156	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	1e-27	125	Glycine max	Gma.9319.1.S1_s_at	BQ742944	-	-	5e-21	At4g37540	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	C.G.	S.X.	Please select
0.02	3e-1	36	Hordeum vulgare	Contig9755_at	Contig9755	-	-	3e-1	At5g59080	unknown protein	C.G.	S.X.	Please select
0.03	8e-2	40	Oryza sativa	Os01g0511000	AK071246.1	-	LOB domain protein 40	8e-7	At1g67100	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-1	38	Triticum aestivum	Ta.19488.1.S1_at	CA652517	-	-	1e+1	At2g32765	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)	C.G.	S.X.	Please select
0.14	9e-19	93	Vitis vinifera	1610679_at	CF604560	hypothetical protein LOC100261250	-	6e-4	At4g37540	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	ZmAffx.253.1.A1_at	AI670278	-	-	8e-1	At5g25870	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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