CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3766.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.3766.1.S1_at CV249196 hypothetical protein - 2e-59 At3g42830 ring-box protein Roc1/Rbx1/Hrt1, putative S.X. H.G.
0.73 93.6 PtpAffx.37591.4.A1_a_at CV264796 hypothetical protein - 9e-1 At5g14530 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.60 86.0 PtpAffx.697.2.S1_a_at CV232354 hypothetical protein - 8e-3 At5g62440 - S.X. H.G.
0.50 78.6 PtpAffx.84152.1.A1_s_at CK097049 hypothetical protein - 1e-22 At1g71350 eukaryotic translation initiation factor SUI1 family protein S.X. H.G.
0.40 67.0 PtpAffx.35315.1.S1_at CF229140 hypothetical protein - 1e+0 At5g54850 unknown protein S.X. H.G.
0.40 67.0 Ptp.2120.1.S1_at CK089943 hypothetical protein - 3e-15 At4g11420 EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.9 98.7 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.7 98.3 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.4 98.2 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 6e-177 621 PtpAffx.77954.1.S1_at AY302066.1 - - 1e-47 At3g42830 ring-box protein Roc1/Rbx1/Hrt1, putative C.G. S.X.
0.49 6e-177 621 PtpAffx.77954.1.S1_x_at AY302066.1 hypothetical protein - 1e-47 At3g42830 ring-box protein Roc1/Rbx1/Hrt1, putative C.G. S.X.
0.48 1e-171 603 PtpAffx.77954.2.S1_at CV249459 hypothetical protein - 2e-46 At3g42830 ring-box protein Roc1/Rbx1/Hrt1, putative C.G. S.X.
0.28 5e-57 222 PtpAffx.26755.1.S1_at CK318492 - - 5e-59 At5g20570 RBX1 (RING-BOX 1) C.G. S.X.
0.02 2e-1 38 PtpAffx.56897.1.A1_at CV246950 hypothetical protein - 1e+0 At5g14370 - C.G. S.X.
0.03 6e-1 36 PtpAffx.94727.1.A1_at CV274161 - - 3e+0 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) C.G. S.X.
0.01 6e-1 36 PtpAffx.203823.1.S1_at pmrna7554 hypothetical protein - 5e-24 At4g18750 DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) C.G. S.X.
0.02 2e+0 34 PtpAffx.225010.1.S1_at pmrna43997 hypothetical protein - 4e-6 At4g21440 ATMYB102 (ARABIDOPSIS MYB-LIKE 102) C.G. S.X.
0.03 2e+0 34 PtpAffx.221402.1.S1_at pmrna38275 hypothetical protein - 5e-131 Atmg00650 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 2e-59 230 Arabidopsis thaliana At3g42830 823327 ring-box protein Roc1/Rbx1/Hrt1, putative F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:ubiquitin ligase complex;MOFPV - - - C.G. S.X.
0.30 7e-47 188 Glycine max Gma.5885.1.S1_at CD405440 - - 3e-35 At5g20570 RBX1 (RING-BOX 1) C.G. S.X.
0.29 5e-39 161 Hordeum vulgare Contig3871_at Contig3871 - - 3e-41 At5g20570 RBX1 (RING-BOX 1) C.G. S.X.
0.17 1e-24 115 Oryza sativa Os01g0106800 AK099287.1 - RING-box protein 1a (RBX1a-At) (At-Rbx1;1)(RBX1-2) 3e-53 At5g20570 RBX1 (RING-BOX 1) C.G. S.X.
0.27 8e-46 184 Triticum aestivum Ta.5537.1.S1_at CD890152 - - 2e-43 At5g20570 RBX1 (RING-BOX 1) C.G. S.X.
0.25 2e-62 238 Vitis vinifera 1621952_at BQ797666 hypothetical protein LOC100259489 - 3e-54 At5g20570 RBX1 (RING-BOX 1) C.G. S.X.
0.27 3e-46 184 Zea mays Zm.6061.1.S1_at AY109202.1 hypothetical protein LOC100192928 - 2e-46 At5g20570 RBX1 (RING-BOX 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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