CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3736.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 Ptp.3736.1.A1_at CV256427 hypothetical protein - 3e-24 At3g54020 phosphatidic acid phosphatase-related / PAP2-related S.X. H.G.
0.55 82.2 PtpAffx.204811.1.S1_at pmrna9484 hypothetical protein - 1e-14 At5g13500 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.11720.1.S1_at CV256791 hypothetical protein - 1e-5 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) S.X. H.G.
0.50 78.6 Ptp.5068.1.S1_a_at DN483716 hypothetical protein - 6e-3 At3g29170 unknown protein S.X. H.G.
0.44 71.9 Ptp.5068.2.A1_a_at CV247817 hypothetical protein - 6e-3 At3g29170 unknown protein S.X. H.G.
0.22 38.3 PtpAffx.249.310.S1_at BU830668 hypothetical protein - 4e-12 At5g42050 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.8 99.1 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.3 98.2 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 2e-137 490 PtpAffx.3194.1.A1_at CV230326 hypothetical protein - 3e-20 At2g37940 - C.G. S.X.
0.16 2e-78 293 PtpAffx.152513.1.S1_at AJ774588 hypothetical protein - 4e-10 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.15 1e-11 71 PtpAffx.200760.1.S1_at pmrna1472 hypothetical protein - 1e-13 At2g37940 - C.G. S.X.
0.10 9e-10 65 PtpAffx.146477.1.A1_at CV275441 hypothetical protein - 3e+0 At5g62420 aldo/keto reductase family protein C.G. S.X.
0.12 8e-7 56 PtpAffx.204934.1.S1_at pmrna9768 hypothetical protein - 1e-5 At2g37940 - C.G. S.X.
0.01 2e-1 38 PtpAffx.208822.1.S1_at pmrna17492 hypothetical protein - 3e-13 At1g60630 leucine-rich repeat family protein C.G. S.X.
0.01 2e-1 38 PtpAffx.206852.1.S1_at pmrna13612 hypothetical protein - 3e-136 At4g31750 WIN2 (HOPW1-1-INTERACTING 2) C.G. S.X.
0.02 3e+0 34 PtpAffx.57062.1.A1_at CV245526 hypothetical protein - 5e-12 At2g32415 3'-5' exonuclease/ nucleic acid binding C.G. S.X.
0.01 3e+0 34 PtpAffx.30517.1.S1_s_at CV272621 hypothetical protein - 9e-16 At3g04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 3e-24 113 Arabidopsis thaliana At3g54020 824569 phosphatidic acid phosphatase-related / PAP2-related F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOP - - - C.G. S.X.
0.47 2e-38 161 Glycine max Gma.10801.1.S1_at AW309829 - - 1e-14 At2g37940 - C.G. S.X.
0.10 5e-12 71 Hordeum vulgare Contig20371_at Contig20371 - - 9e-6 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.10 2e-8 61 Oryza sativa Os05g0287800 AK071727.1 - Conserved hypothetical protein 7e-11 At2g37940 - C.G. S.X.
0.06 2e-3 44 Triticum aestivum Ta.9266.2.S1_at CA637287 - - 2e-3 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.47 5e-94 343 Vitis vinifera 1621632_at BQ794172 hypothetical protein LOC100266611 - 9e-28 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.12 6e-5 48 Zea mays Zm.17912.1.S1_at BU050922 hypothetical protein LOC100273314 - 6e-7 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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