Gene omics information

Query gene ID	Ptp.3673.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	Ptp.3673.1.S1_s_at	CK096543	hypothetical protein	-	6e-1	At4g00355	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.15785.2.A1_a_at	CV259833	hypothetical protein	-	2e-8	At4g29850	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.94574.1.A1_a_at	CV281840	hypothetical protein	-	2e-3	At2g29640	JOSL (JOSEPHIN-LIKE PROTEIN)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.692.1.S1_x_at	CX185889	hypothetical protein	-	1e-1	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.115945.1.S1_s_at	CN521589	hypothetical protein	-	5e-2	At4g00355	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.333.1.S1_at	CK088426	hypothetical protein	-	6e-7	At4g12040	zinc finger (AN1-like) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.9	98.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.8	98.7	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.84	0	2196	PtpAffx.211549.1.S1_at	pmrna22632	hypothetical protein	-	3e-3	At4g00355	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	0	698	PtpAffx.115945.1.S1_s_at	CN521589	hypothetical protein	-	5e-2	At4g00355	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.55	1e-147	523	PtpAffx.150530.1.S1_at	CX187047	hypothetical protein	-	8e-6	At4g00355	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	5e-135	482	Ptp.3874.2.S1_at	DN487794	hypothetical protein	-	9e+0	At5g47830	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.59	3e-105	383	Ptp.4801.1.A1_s_at	CV251432	-	-	1e+0	At4g00355	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.59	3e-105	383	Ptp.4801.1.A1_at	CV251432	hypothetical protein	-	1e+0	At4g00355	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	9e-41	169	Ptp.4801.2.A1_at	BU830253	hypothetical protein	-	1e+0	At4g00355	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	2e-14	81	PtpAffx.95733.1.A1_at	CV235000	hypothetical protein	-	8e+0	At4g24974	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-2	42	PtpAffx.223369.1.S1_x_at	pmrna41335	hypothetical protein	-	1e-128	At1g24706	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	6e-1	36	Arabidopsis thaliana	At4g00355	827659	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	1e-9	65	Glycine max	Gma.7347.1.A1_at	AI959793	-	-	7e-3	At2g45980	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Hordeum vulgare	Contig25536_at	Contig25536	-	-	1e-1	At1g70120	unknown protein	C.G.	S.X.	Please select
0.04	8e-2	40	Oryza sativa	Os02g0821900	AK071088.1	-	Conserved hypothetical protein	2e-1	At4g00355	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	7e-1	36	Triticum aestivum	TaAffx.36762.2.S1_s_at	BJ315636	-	-	3e+0	At5g13180	ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)	C.G.	S.X.	Please select
0.11	2e-23	109	Vitis vinifera	1615628_at	CB345697	hypothetical protein LOC100244782	-	5e-1	At4g10080	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.15467.1.A1_at	CD219385	-	-	4e-1	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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