CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3671.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.43 69.7 Ptp.3671.1.S1_at CK112025 hypothetical protein - 3e-2 At5g58580 ATL63 (ARABIDOPSIS TÓ S.X. H.G.
0.60 86.0 Ptp.2544.1.A1_at CK087698 hypothetical protein - 1e-12 At3g24660 TMKL1 (transmembrane kinase-like 1) S.X. H.G.
0.60 86.0 PtpAffx.11483.2.A1_at CK106946 hypothetical protein - 7e-2 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) S.X. H.G.
0.50 78.6 Ptp.6684.1.S1_at DN484836 hypothetical protein - 1e+0 At5g63700 zinc finger (C3HC4 type RING finger) family protein S.X. H.G.
0.50 78.6 PtpAffx.106138.1.S1_at BU889364 - - 2e+0 At4g17585 unknown protein S.X. H.G.
0.44 71.9 Ptp.478.1.A1_at CK087253 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.4 99.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.3 98.5 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.7 98.3 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.6 98.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.3 98.2 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.3 97.7 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.1 97.6 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 2e-56 220 PtpAffx.86819.1.A1_at DN488823 - - 2e+0 At3g44140 unknown protein C.G. S.X.
0.02 4e-2 40 PtpAffx.207892.1.S1_at pmrna15667 hypothetical protein - 2e-65 At1g26480 GRF12 (GENERAL REGULATORY FACTOR 12) C.G. S.X.
0.02 4e-2 40 Ptp.1930.1.S1_s_at BU891789 hypothetical protein - 8e-49 At1g26480 GRF12 (GENERAL REGULATORY FACTOR 12) C.G. S.X.
0.03 1e-1 38 PtpAffx.132910.1.S1_s_at CX170714 hypothetical protein - 1e-40 At5g64670 ribosomal protein L15 family protein C.G. S.X.
0.02 1e-1 38 Ptp.3699.1.S1_at CK092948 hypothetical protein - 1e-48 At5g64670 ribosomal protein L15 family protein C.G. S.X.
0.04 6e-1 36 PtpAffx.89403.1.A1_at CV226786 hypothetical protein - 3e-1 At1g03760 prefoldin subunit family protein C.G. S.X.
0.03 6e-1 36 PtpAffx.88663.1.A1_at CV257263 - - 1e+0 At5g28491 unknown protein C.G. S.X.
0.02 6e-1 36 PtpAffx.49746.2.A1_at CV253782 hypothetical protein - 2e-2 At1g48790 mov34 family protein C.G. S.X.
0.03 6e-1 36 PtpAffx.341.1.S1_at AJ776524 - - 5e-9 At5g46840 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 40 Arabidopsis thaliana At5g58580 835972 ATL63 (ARABIDOPSIS TÓ F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB - - - C.G. S.X.
0.03 6e-1 36 Glycine max GmaAffx.44945.1.S1_at BF070127 - - 2e-1 At1g62310 transcription factor jumonji (jmjC) domain-containing protein C.G. S.X.
0.02 1e+1 30 Hordeum vulgare EBro08_SQ007_P13_at EBro08_SQ007_P13 - - 4e+0 At2g22060 - C.G. S.X.
0.03 8e-1 36 Oryza sativa Os01g0371600 9629.m02618 - - 3e+0 At3g18430 calcium-binding EF hand family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.43693.1.S1_at BF199968 - - 2e+0 At4g01680 MYB55 (myb domain protein 55) C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1618115_at CD802345 hypothetical protein LOC100253328 - 1e+0 At2g45950 ASK20 (ARABIDOPSIS SKP1-LIKE 20) C.G. S.X.
0.03 3e+0 32 Zea mays Zm.16228.1.S1_a_at BU197473 hypothetical protein LOC100275186 - 2e-2 At4g17310 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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