Gene omics information

Query gene ID	Ptp.3670.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	97.7	Ptp.3670.1.S1_at	CV273865	hypothetical protein	-	5e-11	At4g08300	nodulin MtN21 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.84	97.1	PtpAffx.12427.2.S1_at	CV227991	-	-	1e-19	At4g04210	PUX4	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.127059.1.A1_at	CV258719	hypothetical protein	-	1e-4	At1g66270	BGLU21	S.X.	H.G.	Please selecteFP Browser (expression)
0.79	95.3	PtpAffx.212416.1.S1_at	pmrna24321	hypothetical protein	-	5e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.79	95.3	PtpAffx.162331.2.S1_at	AJ780051	-	-	1e+0	At4g11640	ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.56188.1.A1_at	CV274756	hypothetical protein	-	5e+0	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	S.X.	H.G.	Please selecteFP Browser (expression)
0.75	94.1	PtpAffx.51939.1.S1_at	CV271961	glutaredoxin	-	2e-3	At3g62930	glutaredoxin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.218983.1.S1_at	pmrna34757	hypothetical protein	-	3e-4	At5g12260	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.69	91.5	PtpAffx.158291.1.A1_at	BP931571	-	-	3e+0	At5g65320	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.200185.1.S1_at	pmrna342	hypothetical protein	-	8e-4	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
51.5	100.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
23.7	99.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.4	82.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.1	78.0	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.9	74.2	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.7	69.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.7	69.4	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.5	63.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	0	682	Ptp.3670.2.S1_at	CV229210	hypothetical protein	-	1e-6	At1g21890	nodulin MtN21 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.45	2e-146	519	PtpAffx.51937.1.A1_at	CK096539	hypothetical protein	-	1e-1	At4g08300	nodulin MtN21 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.45	2e-125	450	PtpAffx.137668.1.S1_at	CK106356	hypothetical protein	-	2e-2	At2g37460	nodulin MtN21 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e-5	50	PtpAffx.207691.1.S1_at	pmrna15265	hypothetical protein	-	6e-7	At2g39510	nodulin MtN21 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-3	44	PtpAffx.38872.1.S1_at	CN517479	hypothetical protein	-	2e-5	At3g56620	integral membrane family protein / nodulin MtN21-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.209368.1.S1_at	pmrna18550	hypothetical protein	-	2e+0	At5g13590	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.209369.1.S1_at	pmrna18551	hypothetical protein	-	1e+0	At3g08600	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.207690.1.S1_at	pmrna15264	hypothetical protein	-	2e+0	At5g06020	self-incompatibility protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.207668.1.S1_at	pmrna15225	hypothetical protein	-	1e-1	At5g13590	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	5e-11	69	Arabidopsis thaliana	At4g08300	826384	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	3e-7	57	Glycine max	Gma.4584.1.S1_at	BF009459	-	-	9e-3	At1g44800	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.02	5e+0	32	Hordeum vulgare	HVSMEc0007F14f_at	HVSMEc0007F14f	-	-	7e+0	Atmg01220	-	C.G.	S.X.	Please select
0.05	2e-2	42	Oryza sativa	Os10g0210500	AK062163.1	-	Protein of unknown function DUF6 domain containingprotein	1e+0	At1g44800	nodulin MtN21 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-1	38	Triticum aestivum	TaAffx.104817.1.S1_at	CA744405	-	-	7e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1613230_at	CB343417	hypothetical protein LOC100250421	-	1e+0	At1g47820	unknown protein	C.G.	S.X.	Please select
0.02	2e+1	30	Zea mays	ZmAffx.1118.2.A1_at	AW267189	-	-	8e-1	At2g27360	lipase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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