CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3640.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 Ptp.3640.1.S1_at BU895250 hypothetical protein - 7e-2 At4g09890 unknown protein S.X. H.G.
0.92 99.3 PtpAffx.15088.1.S1_at CF936886 hypothetical protein - 7e-3 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) S.X. H.G.
0.67 91.1 Ptp.7446.1.S1_at BU814736 hypothetical protein - 2e+0 At3g21710 unknown protein S.X. H.G.
0.55 82.2 Ptp.5913.1.S1_s_at CV244093 AP2/ERF domain-containing transcription factor - 2e-15 At1g28360 ERF12 (ERF DOMAIN PROTEIN 12) S.X. H.G.
0.53 80.5 PtpAffx.149893.1.S1_s_at DN486606 hypothetical protein - 1e-8 At3g12950 catalytic S.X. H.G.
0.44 71.9 PtpAffx.72354.1.S1_at BU889551 hypothetical protein - 3e+0 At4g14104 unknown protein S.X. H.G.
0.27 47.1 Ptp.5711.1.S1_at AJ849329.1 auxin efflux carrier component - 2e-7 At1g73590 PIN1 (PIN-FORMED 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.3 98.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.4 98.2 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.1 98.1 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.0 98.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.9 98.0 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.4 97.7 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.82 2e-175 615 PtpAffx.95409.1.S1_s_at CV247239 hypothetical protein - 8e-2 At4g09890 unknown protein C.G. S.X.
0.42 4e-81 301 PtpAffx.97498.1.S1_at CV246186 - - 8e-2 At4g09890 unknown protein C.G. S.X.
0.08 4e-4 46 Ptp.8100.1.S1_a_at BU884051 hypothetical protein - 7e-2 At1g35515 HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10) C.G. S.X.
0.01 4e-1 36 PtpAffx.201837.1.S1_at pmrna3659 hypothetical protein - 2e-4 At1g77250 PHD finger family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.62743.1.A1_at CV267782 - - 4e-1 At3g57040 ARR9 (RESPONSE REGULATOR 9) C.G. S.X.
0.03 2e+0 34 PtpAffx.53853.1.A1_at CV243962 sarcosine oxidase - 2e-16 At2g24580 sarcosine oxidase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.219269.1.S1_at pmrna35138 hypothetical protein - 2e-13 At1g11800 endonuclease/exonuclease/phosphatase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.211110.1.S1_at pmrna21826 hypothetical protein - 6e-1 At3g17265 F-box family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.208564.1.S1_at pmrna16985 hypothetical protein - 4e-1 At4g33690 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-2 38 Arabidopsis thaliana At4g09890 826579 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.14 7e-6 52 Glycine max GmaAffx.39722.1.S1_at BE057961 - - 4e-1 At4g09890 unknown protein C.G. S.X.
0.03 9e+0 30 Hordeum vulgare Contig2790_s_at Contig2790 thaumatin-like protein TLP7 - 3e-1 At1g75040 PR5 (PATHOGENESIS-RELATED GENE 5) C.G. S.X.
0.03 2e+0 34 Oryza sativa Os.9004.1.S1_at - - - 0 C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.29437.1.S1_at CA642941 - - 9e+0 At4g14305 - C.G. S.X.
0.27 9e-11 65 Vitis vinifera 1608123_at CF212664 hypothetical protein LOC100247050 - 1e+0 At4g12860 UNE14 (unfertilized embryo sac 14) C.G. S.X.
0.03 8e+0 30 Zea mays ZmAffx.955.1.S1_at AI833505 - - 8e-1 At2g47480 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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