CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3629.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 87.0 Ptp.3629.1.S1_at DN492509 hypothetical protein - 1e-20 At2g02590 - S.X. H.G.
0.60 86.0 PtpAffx.206937.1.S1_at pmrna13762 hypothetical protein - 2e-71 At3g20320 TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2) S.X. H.G.
0.50 78.6 PtpAffx.144999.1.A1_s_at CV244449 hypothetical protein - 4e-1 At2g47840 tic20 protein-related S.X. H.G.
0.40 67.0 PtpAffx.49222.1.S1_at BP930894 hypothetical protein - 9e-25 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) S.X. H.G.
0.25 43.6 PtpAffx.19666.1.A1_at CV229370 hypothetical protein - 3e-33 At1g09795 ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2) S.X. H.G.
0.13 21.6 PtpAffx.206937.1.S1_x_at pmrna13762 hypothetical protein - 2e-71 At3g20320 TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.0 97.5 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.6 97.2 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5 94.3 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8 92.1 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4 90.4 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 PtpAffx.9411.1.A1_at BP934185 hypothetical protein - 5e-9 At2g39550 PGGT-I C.G. S.X.
0.02 3e+0 34 PtpAffx.69803.1.A1_at CV242768 hypothetical protein - 1e-3 At5g59010 protein kinase-related C.G. S.X.
0.01 3e+0 34 PtpAffx.38126.1.S1_at CV277967 - - 1e-74 At1g54100 ALDH7B4 (Aldehyde Dehydrogenase 7B4) C.G. S.X.
0.02 3e+0 34 PtpAffx.25173.1.A1_a_at CV243954 cytochrome P450 - 7e-9 At3g53130 LUT1 (LUTEIN DEFICIENT 1) C.G. S.X.
0.01 3e+0 34 PtpAffx.22551.1.S1_s_at CV283667 hypothetical protein - 1e-14 At1g76810 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein C.G. S.X.
0.02 3e+0 34 PtpAffx.224521.1.S1_at pmrna43140 hypothetical protein - 2e-6 At4g32710 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.02 3e+0 34 PtpAffx.211531.1.S1_at pmrna22598 hypothetical protein - 4e-74 At4g00710 BSK3 (BR-SIGNALING KINASE 3) C.G. S.X.
0.01 3e+0 34 PtpAffx.210186.1.S1_at pmrna20064 hypothetical protein - 2e-77 At1g76810 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein C.G. S.X.
0.01 3e+0 34 PtpAffx.204389.1.S1_at pmrna8618 hypothetical protein - 4e-8 At5g22460 esterase/lipase/thioesterase family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-20 101 Arabidopsis thaliana At2g02590 814789 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BAOP - - - C.G. S.X.
0.03 8e-4 46 Glycine max GmaAffx.33157.1.S1_at BQ613125 - - 3e+0 At5g23350 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
0.10 3e-4 46 Hordeum vulgare Contig17106_at Contig17106 - - 5e+0 At1g26890 - C.G. S.X.
0.07 3e-10 67 Oryza sativa Os03g0800500 AK070229.1 - - 2e-1 At1g78410 VQ motif-containing protein C.G. S.X.
0.02 9e+0 32 Triticum aestivum TaAffx.37863.1.S1_at BJ261313 - - 3e-1 At4g18060 clathrin binding C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1622592_at CF212806 hypothetical protein LOC100259320 - 1e-6 At1g02260 transmembrane protein, putative C.G. S.X.
0.02 4e+0 32 Zea mays Zm.8851.1.A1_at CK370727 hypothetical protein LOC100273078 - 3e-6 At4g22330 ATCES1 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage