Gene omics information

Query gene ID	Ptp.3625.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	Ptp.3625.1.A1_at	CV267089	hypothetical protein	-	2e-12	At3g07560	PEX13 (PEROXIN 13)	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	Ptp.2014.1.S1_s_at	CV258759	hypothetical protein	-	2e-50	At4g29490	aminopeptidase/ manganese ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.108603.1.A1_s_at	CV279639	hypothetical protein	-	8e-1	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.108517.1.A1_at	CV236445	hypothetical protein	-	3e-14	At5g35460	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.203451.1.S1_at	pmrna6871	hypothetical protein	-	5e-9	At1g04790	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.30368.1.S1_at	CV254627	hypothetical protein	-	1e-1	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.74520.1.S1_s_at	CV275234	hypothetical protein	-	7e-57	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.12741.1.A1_at	CV234093	-	-	8e-2	At4g08230	glycine-rich protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.211018.1.S1_at	pmrna21651	hypothetical protein	-	2e-152	At5g28850	calcium-binding EF hand family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.72180.1.S1_s_at	AI162185	hypothetical protein	-	4e-13	At3g51040	RTH (RTE1-HOMOLOG)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	93.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-15	83	PtpAffx.7154.1.S1_at	CF233688	hypothetical protein	-	1e-8	At3g07560	PEX13 (PEROXIN 13)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.3477.3.A1_s_at	CV230833	vacuolar H+-translocating inorganic pyrophosphatase	-	2e-18	At1g16780	vacuolar-type H+-translocating inorganic pyrophosphatase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.3477.1.A1_at	BP933638	vacuolar H+-translocating inorganic pyrophosphatase	-	1e-128	At1g78920	AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.3477.3.A1_at	CV230833	-	-	2e-18	At1g16780	vacuolar-type H+-translocating inorganic pyrophosphatase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.214540.1.S1_at	pmrna28255	vacuolar H+-translocating inorganic pyrophosphatase	-	0	At1g15690	AVP1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	Ptp.6524.1.S1_s_at	BU863669	vacuolar H+-translocating inorganic pyrophosphatase	-	0	At1g15690	AVP1	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	Ptp.3620.1.S1_s_at	CX179885	vacuolar H+-translocating inorganic pyrophosphatase	-	0	At1g15690	AVP1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	Ptp.2699.1.A1_s_at	CV234550	vacuolar H+-translocating inorganic pyrophosphatase	-	1e-100	At1g15690	AVP1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	Ptp.2217.1.S1_at	BP933874	vacuolar H+-translocating inorganic pyrophosphatase	-	6e-28	At1g16780	vacuolar-type H+-translocating inorganic pyrophosphatase, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-12	73	Arabidopsis thaliana	At3g07560	819945	PEX13 (PEROXIN 13)	Encodes peroxin 13 (PEX13) involved in protein transport into peroxisomes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	1e-8	61	Glycine max	Gma.11224.2.S1_s_at	BM091821	-	-	2e-3	At3g07560	PEX13 (PEROXIN 13)	C.G.	S.X.	Please select
0.03	1e+0	34	Hordeum vulgare	HK05P12r_x_at	HK05P12r	-	-	2e+0	At2g06925	PLA2-ALPHA	C.G.	S.X.	Please select
0.02	1e-3	46	Oryza sativa	Os03g0786000	AK061286.1	-	Conserved hypothetical protein	3e+0	At3g07560	PEX13 (PEROXIN 13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-3	44	Triticum aestivum	TaAffx.110958.1.S1_at	CA650894	-	-	4e+0	At5g18000	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.20	8e-22	103	Vitis vinifera	1612141_at	CF515249	hypothetical protein LOC100251659	-	1e-16	At3g07560	PEX13 (PEROXIN 13)	C.G.	S.X.	Please select
0.04	9e-4	44	Zea mays	Zm.10077.1.A1_at	CA399756	glycine-rich protein	-	7e-1	At3g07560	PEX13 (PEROXIN 13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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