Gene omics information

Query gene ID	Ptp.3621.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	Ptp.3621.1.S1_at	DN492641	-	-	7e-2	At3g60328	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.2232.1.S1_at	CK089340	-	-	5e+0	At4g11040	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.48049.1.S1_at	DN489796	hypothetical protein	-	5e+0	At5g24410	glucosamine/galactosamine-6-phosphate isomerase-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.41755.1.S1_at	DN499227	hypothetical protein	-	3e-2	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.31469.1.A1_at	DN493005	hypothetical protein	-	2e-40	At1g66460	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.3760.1.S1_at	BU886519	hypothetical protein	-	2e+0	At5g37900	seven in absentia (SINA) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.8	98.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.6	97.2	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.4	97.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	3e-79	295	PtpAffx.215415.1.S1_at	pmrna29580	hypothetical protein	-	6e-94	At5g15700	DNA-directed RNA polymerase (RPOT2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	2e-77	289	PtpAffx.215414.1.S1_at	pmrna29579	hypothetical protein	-	2e-103	At5g15700	DNA-directed RNA polymerase (RPOT2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	2e-77	289	PtpAffx.215414.1.S1_s_at	pmrna29579	hypothetical protein	-	2e-103	At5g15700	DNA-directed RNA polymerase (RPOT2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	1e-65	250	PtpAffx.217322.1.S1_at	pmrna32536	hypothetical protein	-	9e-113	At5g15700	DNA-directed RNA polymerase (RPOT2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	2e-9	63	PtpAffx.207976.1.S1_at	pmrna15834	hypothetical protein	-	8e-39	At1g68990	DNA-directed RNA polymerase, mitochondrial (RPOMT)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	3e-8	59	PtpAffx.209013.1.S1_at	pmrna17853	hypothetical protein	-	7e-27	At1g68990	DNA-directed RNA polymerase, mitochondrial (RPOMT)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.214451.1.S1_at	pmrna28099	hypothetical protein	-	2e-48	At2g24120	SCA3 (SCABRA 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.84165.1.A1_s_at	CK096674	hypothetical protein	-	2e-24	At1g19440	KCS4 (3-KETOACYL-COA SYNTHASE 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.224897.1.S1_at	pmrna43819	hypothetical protein	-	3e-40	At1g19440	KCS4 (3-KETOACYL-COA SYNTHASE 4)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-2	38	Arabidopsis thaliana	At3g60328	6241431	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-15	83	Glycine max	GmaAffx.51952.1.S1_at	CA785033	-	-	4e-18	At1g68990	DNA-directed RNA polymerase, mitochondrial (RPOMT)	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig25509_at	Contig25509	-	-	7e-2	At5g25240	-	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	Os.51061.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-3	42	Triticum aestivum	Ta.19803.1.S1_at	AF091838.1	-	-	1e-23	At5g15700	DNA-directed RNA polymerase (RPOT2)	C.G.	S.X.	Please select
0.08	7e-18	89	Vitis vinifera	1617360_at	BQ796794	hypothetical protein LOC100266898	-	7e-6	At5g15700	DNA-directed RNA polymerase (RPOT2)	C.G.	S.X.	Please select
0.04	6e-13	73	Zea mays	Zm.629.1.S1_at	AF127021.1	RNA polymerase T phage-like 1	-	9e-15	At1g68990	DNA-directed RNA polymerase, mitochondrial (RPOMT)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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