CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3530.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.3530.1.S1_at CV262873 hypothetical protein - 1e-1 At5g25280 serine-rich protein-related S.X. H.G.
0.67 91.1 PtpAffx.34173.1.S1_at CV227862 hypothetical protein - 2e+0 At3g15358 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.151954.3.S1_at CX186472 hypothetical protein - 7e-33 At3g58180 PBS lyase HEAT-like repeat-containing protein S.X. H.G.
0.61 87.0 PtpAffx.151954.1.S1_a_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein S.X. H.G.
0.53 80.5 PtpAffx.3096.2.S1_s_at CF231355 - - 5e-7 At2g25900 ATCTH S.X. H.G.
0.50 78.6 PtpAffx.151954.1.S1_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.4 99.0 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.0 98.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.4 98.8 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.3 98.8 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.1 98.7 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.9 98.7 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.5 98.3 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.2 98.1 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8 86.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 5e-110 398 PtpAffx.83765.1.S1_at CV228331 hypothetical protein - 1e-4 At5g11090 serine-rich protein-related C.G. S.X.
0.41 3e-74 280 Ptp.2523.1.S1_at CV227907 hypothetical protein - 2e-4 At5g11090 serine-rich protein-related C.G. S.X.
0.41 3e-74 280 Ptp.2523.1.S1_s_at CV227907 hypothetical protein - 2e-4 At5g11090 serine-rich protein-related C.G. S.X.
0.13 2e-4 48 PtpAffx.76163.1.A1_at CV242324 - - 1e-2 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) C.G. S.X.
0.03 2e-1 38 PtpAffx.140515.1.A1_at CV255334 PAF1 complex component /// PAF complex protein - 8e-11 At3g22590 RNA pol II accessory factor Cdc73 family protein C.G. S.X.
0.02 2e-1 38 Ptp.1500.1.A1_at CV280347 hypothetical protein - 2e-50 At4g38620 MYB4 C.G. S.X.
0.01 8e-1 36 PtpAffx.224179.1.S1_at pmrna42474 hypothetical protein - 1e-1 At4g35370 nucleotide binding C.G. S.X.
0.02 8e-1 36 PtpAffx.206121.1.S1_at pmrna12138 hypothetical protein - 1e-4 At2g41750 DTW domain-containing protein C.G. S.X.
0.02 8e-1 36 PtpAffx.206121.1.S1_s_at pmrna12138 hypothetical protein - 1e-4 At2g41750 DTW domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Arabidopsis thaliana At5g25280 832600 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB - - - C.G. S.X.
0.16 8e-4 46 Glycine max GmaAffx.1411.1.S1_s_at AW350832 - - 2e-3 At5g20370 serine-rich protein-related C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig4317_at Contig4317 - - 2e-1 At1g36060 AP2 domain-containing transcription factor, putative C.G. S.X.
0.02 1e+0 36 Oryza sativa OsAffx.22858.1.S1_x_at - - - 0 C.G. S.X.
0.04 2e-1 38 Triticum aestivum TaAffx.25517.1.S1_at CA698894 - - 1e+0 At3g15270 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5) C.G. S.X.
0.18 7e-7 54 Vitis vinifera 1610056_s_at CB341777 hypothetical protein LOC100256876 /// hypothetical protein LOC100261970 /// hypothetical protein LOC100266371 - 8e-3 At5g25280 serine-rich protein-related C.G. S.X.
0.02 4e+0 32 Zea mays Zm.9557.1.A1_at BI423687 Glycine cleavage H-protein - 2e-2 At1g32470 glycine cleavage system H protein, mitochondrial, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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